RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 FAM205AQ6ZU69 1335 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 TBX3O15119 743 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 CLDN3O15551 220 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 SLC7A5Q01650 507 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 RASGRP2Q7LDG7 609 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 RNF10Q8N5U6 811 aaKnown RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 FAM81BQ96LP2 452 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 ZNF302Q9NR11 478 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 CAPN11Q9UMQ6 739 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 PIK3C2AO00443 1686 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 FRMD3A2A2Y4 597 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 PALMO75781 387 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 BFSP1Q12934 665 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 PPP2R5DQ14738 602 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 BSPRYQ5W0U4 402 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 CASC4Q6P4E1 433 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 CAPN12Q6ZSI9 719 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 CYFIP1Q7L576 1253 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 TEX13BQ9BXU2 312 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 DAAM1Q9Y4D1 1078 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 MON2Q7Z3U7 1717 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 SALL1Q9NSC2 1324 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 RIC1Q4ADV7 1423 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 NFAT5O94916 1531 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 ASB14A6NK59 587 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 VAMP7P51809 220 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 IFRD2Q12894 506 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 ZNF394Q53GI3 561 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 GLE1Q53GS7 698 aaKnown RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 CATSPER4Q7RTX7 472 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 REXO1L1PQ8IX06 675 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 GRK7Q8WTQ7 553 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 TCP11Q8WWU5 503 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 TRIM11Q96F44 468 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 RAB3IPQ96QF0 476 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 PPP1R12CQ9BZL4 782 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 CXorf56Q9H5V9 222 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 KCNH4Q9UQ05 1017 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 TTLL3Q9Y4R7 772 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 PPP1R3GB7ZBB8 358 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 HGSO14964 777 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 FXR2P51116 673 aaKnown RBP eCLIP11.85□□□□□ -0.514e-6■■■□□ 18.2
HDAC6-228ENST00000486227 MXRA7P84157 204 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 DRAP1Q14919 205 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 GRIK5Q16478 980 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 EARS2Q5JPH6 523 aaKnown RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 SMC6Q96SB8 1091 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 PARK7Q99497 189 aaKnown RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 AP1M1Q9BXS5 423 aa11.85□□□□□ -0.51
HDAC6-228ENST00000486227 GEMIN8Q9NWZ8 242 aaKnown RBP11.85□□□□□ -0.51
HDAC6-228ENST00000486227 PDXKO00764 312 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 SNX1Q13596 522 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 MAPK6Q16659 721 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 ILDR1Q86SU0 546 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 C7orf31Q8N865 590 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 PBKQ96KB5 322 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 ZFYVE28Q9HCC9 887 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 STK38LQ9Y2H1 464 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 CELF2O95319 508 aaKnown RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 NBPF9Q3BBW0 867 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 ANKRD13AQ8IZ07 590 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 RPF1Q9H9Y2 349 aaKnown RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 AGPAT5Q9NUQ2 364 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 PASKQ96RG2 1323 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 SYNJ2BP-COX16A0A087WUM0 186 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 LDHAP00338 332 aaKnown RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 NR3C2P08235 984 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 YWHABP31946 246 aaKnown RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 ZKSCAN8Q15776 578 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 DNAJC24Q6P3W2 148 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 TC2NQ8N9U0 490 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 GABPB2Q8TAK5 448 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 TMEM106CQ9BVX2 250 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 CNOT10Q9H9A5 744 aaKnown RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 LRRC4BQ9NT99 713 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.84□□□□□ -0.514e-7■■■■■ 44
HDAC6-228ENST00000486227 COX16Q9P0S2 106 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 SLC9A2Q9UBY0 812 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 NDC80O14777 642 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 ATF2P15336 505 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 RASSF2P50749 326 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 MGARPQ8TDB4 240 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 PSPC1Q8WXF1 523 aaKnown RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 POLR3FQ9H1D9 316 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-228ENST00000486227 KLHL14Q9P2G3 628 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 HDAC6Q9UBN7 1215 aa11.84□□□□□ -0.51
HDAC6-228ENST00000486227 SPDYE2BA6NHP3 402 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 SPDYE6P0CI01 402 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 RPA1P27694 616 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 PLTPP55058 493 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 HIBCHQ6NVY1 386 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-228ENST00000486227 CTAGE3PQ8IX95 158 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 ANKRD42Q8N9B4 389 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 FAM149B1Q96BN6 582 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 MTRQ99707 1265 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 DDX4Q9NQI0 724 aaKnown RBP11.83□□□□□ -0.52
HDAC6-228ENST00000486227 EMSYQ7Z589 1322 aa11.83□□□□□ -0.52
HDAC6-228ENST00000486227 HOXA10P31260 410 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-228ENST00000486227 SLMAPQ14BN4 828 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms