RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 SPATA1Q5VX52 437 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 IER5Q5VY09 327 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 ANKRD40Q6AI12 368 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 MTHFD1LQ6UB35 978 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 CXCL17Q6UXB2 119 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 TAS1R3Q7RTX0 852 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 FAM178BQ8IXR5 827 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 LRRC71Q8N4P6 559 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 TMEM161BQ8NDZ6 487 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 PPP1R13LQ8WUF5 828 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 LMBR1Q8WVP7 490 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 JPH2Q9BR39 696 aaPredicted RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 MTG1Q9BT17 334 aaPredicted RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 KIFC3Q9BVG8 833 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 KATNAL1Q9BW62 490 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 UNC93B1Q9H1C4 597 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 IKZF4Q9H2S9 585 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 MRPL44Q9H9J2 332 aaKnown RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 PAK6Q9NQU5 681 aaPredicted RBP9.1□□□□□ -0.95
USP4-210ENST00000483212 ARHGAP28Q9P2N2 729 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 NFE2L3Q9Y4A8 694 aa9.1□□□□□ -0.95
USP4-210ENST00000483212 GRIN2DO15399 1336 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 NRCAMQ92823 1304 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 RRN3P2A6NIE6 340 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 SMTNL1A8MU46 457 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 K7ENM7 598 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 SLC16A4O15374 487 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 MAGEB2O15479 319 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 TGFB1I1O43294 461 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 GCNT3O95395 438 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 ASGR1P07306 291 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 CLCN3P51790 818 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 IGBP1P78318 339 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 STIM1Q13586 685 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 ALCAMQ13740 583 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 MTFR1Q15390 333 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 KCNA10Q16322 511 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 L1TD1Q5T7N2 865 aaKnown RBP9.09□□□□□ -0.95
USP4-210ENST00000483212 CDCA2Q69YH5 1023 aaPredicted RBP9.09□□□□□ -0.95
USP4-210ENST00000483212 EFCAB12Q6NXP0 572 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 LRRC55Q6ZSA7 311 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 HAUS6Q7Z4H7 955 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 CTU1Q7Z7A3 348 aaKnown RBP9.09□□□□□ -0.95
USP4-210ENST00000483212 SESTD1Q86VW0 696 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 IRF2BP1Q8IU81 584 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 KSR1Q8IVT5 923 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 NELFCDQ8IXH7 590 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 EXOC8Q8IYI6 725 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 TCP11Q8WWU5 503 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 PRPF31Q8WWY3 499 aaKnown RBP9.09□□□□□ -0.95
USP4-210ENST00000483212 SPC25Q9HBM1 224 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 SETD4Q9NVD3 440 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 FANCLQ9NW38 375 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 SUCLA2Q9P2R7 463 aaPredicted RBP9.09□□□□□ -0.95
USP4-210ENST00000483212 HDAC6Q9UBN7 1215 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 TRAF3IP3Q9Y228 551 aa9.09□□□□□ -0.95
USP4-210ENST00000483212 BRCA2P51587 3418 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 BICDL2A1A5D9 508 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 ZEB2O60315 1214 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 KIF20AO95235 890 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 EDN1P05305 212 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 GJB1P08034 283 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 ATP1A3P13637 1013 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 LBX1P52954 281 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 ACLYP53396 1101 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 LRRC63Q05C16 580 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 LAMTOR4Q0VGL1 99 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 DMP1Q13316 513 aaPredicted RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 NFIL3Q16649 462 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 KNOP1Q1ED39 458 aaKnown RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 NBPF20Q3BBV1 942 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 NFRKBQ6P4R8 1299 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 FBXO46Q6PJ61 603 aaPredicted RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 SARM1Q6SZW1 724 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 RUFY4Q6ZNE9 571 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 APTXQ7Z2E3 356 aaKnown RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 RNF180Q86T96 592 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 IFNLR1Q8IU57 520 aaPredicted RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 MAP4K3Q8IVH8 894 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 KIAA0319LQ8IZA0 1049 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 PCSK9Q8NBP7 692 aaKnown RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 SLC17A8Q8NDX2 589 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 TMEM174Q8WUU8 243 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 PSPC1Q8WXF1 523 aaKnown RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 HVCN1Q96D96 273 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 CTAGE1Q96RT6 745 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 TSEN34Q9BSV6 310 aaKnown RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 CCDC113Q9H0I3 377 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 SUGCTQ9HAC7 445 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 KMT5AQ9NQR1 393 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 SAMSN1Q9NSI8 373 aaKnown RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 TYW1Q9NV66 732 aaKnown RBP9.08□□□□□ -0.96
USP4-210ENST00000483212 TBX20Q9UMR3 447 aa9.08□□□□□ -0.96
USP4-210ENST00000483212 MYH11P35749 1972 aa9.07□□□□□ -0.96
USP4-210ENST00000483212 SMIM35A0A1B0GVV1 85 aa9.07□□□□□ -0.96
USP4-210ENST00000483212 C17orf102A2RUQ5 167 aa9.07□□□□□ -0.96
USP4-210ENST00000483212 DENND3A2RUS2 1198 aa9.07□□□□□ -0.96
USP4-210ENST00000483212 MOXD2PA6NHM9 499 aa9.07□□□□□ -0.96
USP4-210ENST00000483212 CCDC169A6NNP5 214 aa9.07□□□□□ -0.96
USP4-210ENST00000483212 BECN2A8MW95 431 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms