RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 PCDHGC5Q9Y5F6 944 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 F8VZ95 297 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 FTCDO95954 541 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 KCNA2P16389 499 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 GTF2BQ00403 316 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 MYL7Q01449 175 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 MYBPC2Q14324 1141 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 FAM102BQ5T8I3 360 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 ALKBH5Q6P6C2 394 aaKnown RBP14.18□□□□□ -0.14
SEC13-216ENST00000479868 DLK2Q6UY11 383 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 ZNF572Q7Z3I7 529 aaPredicted RBP14.18□□□□□ -0.14
SEC13-216ENST00000479868 NSUN6Q8TEA1 469 aaKnown RBP14.18□□□□□ -0.14
SEC13-216ENST00000479868 TEX13BQ9BXU2 312 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 GPR88Q9GZN0 384 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 INTS2Q9H0H0 1204 aaKnown RBP14.18□□□□□ -0.14
SEC13-216ENST00000479868 A1CFQ9NQ94 594 aaKnown RBP14.18□□□□□ -0.14
SEC13-216ENST00000479868 DNAJC12Q9UKB3 198 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 NENFQ9UMX5 172 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 AFG3L2Q9Y4W6 797 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 PCDHA10Q9Y5I2 948 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 LCTP09848 1927 aa14.18□□□□□ -0.14
SEC13-216ENST00000479868 SPDYE16A6NNV3 312 aaPredicted RBP14.17□□□□□ -0.14
SEC13-216ENST00000479868 EVI5O60447 810 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 ZMYND10O75800 440 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 TUBBP07437 444 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 NCKAP1LP55160 1127 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 GABPB1Q06547 395 aaPredicted RBP14.17□□□□□ -0.14
SEC13-216ENST00000479868 C10orf76Q5T2E6 689 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 ZNF746Q6NUN9 644 aaPredicted RBP14.17□□□□□ -0.14
SEC13-216ENST00000479868 OLIG1Q8TAK6 271 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 CNKSR2Q8WXI2 1034 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 ST6GALNAC4Q9H4F1 302 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 ANKEF1Q9NU02 776 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 PACSIN2Q9UNF0 486 aaPredicted RBP14.17□□□□□ -0.14
SEC13-216ENST00000479868 WDR90Q96KV7 1748 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 GRID2IPA4D2P6 1211 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 DDX3XO00571 662 aaKnown RBP eCLIP14.17□□□□□ -0.14
SEC13-216ENST00000479868 ATP2A1O14983 1001 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 ZNF862O60290 1169 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 SOX5P35711 763 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 STAT1P42224 750 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 SMC1AQ14683 1233 aaKnown RBP14.17□□□□□ -0.14
SEC13-216ENST00000479868 DRAP1Q14919 205 aaPredicted RBP14.17□□□□□ -0.14
SEC13-216ENST00000479868 GPC2Q8N158 579 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 SPATA4Q8NEY3 305 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 LMO3Q8TAP4 145 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 KIFC3Q9BVG8 833 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 TIPINQ9BVW5 301 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 STK33Q9BYT3 514 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 HSPBP1Q9NZL4 362 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 TMOD4Q9NZQ9 345 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 GABBR1Q9UBS5 961 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 APEX2Q9UBZ4 518 aa14.17□□□□□ -0.14
SEC13-216ENST00000479868 TARSL2A2RTX5 802 aaKnown RBP14.16□□□□□ -0.14
SEC13-216ENST00000479868 BTNL10A8MVZ5 291 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 MAFGO15525 162 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 SORBS3O60504 671 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 LRRN2O75325 713 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 FERP16591 822 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 DNA2P51530 1060 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 SOX10P56693 466 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 SP4Q02446 784 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 NOL9Q5SY16 702 aaKnown RBP14.16□□□□□ -0.14
SEC13-216ENST00000479868 PHLDB3Q6NSJ2 640 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 INTS8Q75QN2 995 aaKnown RBP14.16□□□□□ -0.14
SEC13-216ENST00000479868 HDXQ7Z353 690 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 C12orf56Q8IXR9 622 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.16□□□□□ -0.142e-11■□□□□ 8.9
SEC13-216ENST00000479868 TMEM174Q8WUU8 243 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 MS4A14Q96JA4 679 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 SENP7Q9BQF6 1050 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 ACAD9Q9H845 621 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 EMSYQ7Z589 1322 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 DICER1Q9UPY3 1922 aaKnown RBP14.16□□□□□ -0.14
SEC13-216ENST00000479868 ARID2Q68CP9 1835 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 KRT13P13646 458 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 BRD2P25440 801 aaKnown RBP14.16□□□□□ -0.14
SEC13-216ENST00000479868 VAMP7P51809 220 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 ITIH3Q06033 890 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 PPP3CAQ08209 521 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 C1orf220Q5T0J3 134 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 MEI1Q5TIA1 1274 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 CCDC181Q5TID7 509 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 MMGT1Q8N4V1 131 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 XXYLT1Q8NBI6 393 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 RDM1Q8NG50 284 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 PLEKHO2Q8TD55 490 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 FBXO41Q8TF61 875 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 PPP2R3BQ9Y5P8 575 aa14.16□□□□□ -0.14
SEC13-216ENST00000479868 CCDC169A6NNP5 214 aa14.15□□□□□ -0.14
SEC13-216ENST00000479868 PEX10O60683 326 aa14.15□□□□□ -0.14
SEC13-216ENST00000479868 USP2O75604 605 aaPredicted RBP14.15□□□□□ -0.14
SEC13-216ENST00000479868 STBD1O95210 358 aa14.15□□□□□ -0.14
SEC13-216ENST00000479868 ANXA13P27216 316 aa14.15□□□□□ -0.14
SEC13-216ENST00000479868 MATR3P43243 847 aaKnown RBP eCLIP14.15□□□□□ -0.14
SEC13-216ENST00000479868 NPTX2P47972 431 aa14.15□□□□□ -0.14
SEC13-216ENST00000479868 TERF2Q15554 542 aa14.15□□□□□ -0.14
SEC13-216ENST00000479868 TMEM161BQ8NDZ6 487 aa14.15□□□□□ -0.14
SEC13-216ENST00000479868 LNX1Q8TBB1 728 aaPredicted RBP14.15□□□□□ -0.14
SEC13-216ENST00000479868 BSNDQ8WZ55 320 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms