RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 KNDC1Q76NI1 1749 aa6.92□□□□□ -1.3
UPF3A-205ENST00000479712 KIAA1551Q9HCM1 1747 aa6.92□□□□□ -1.3
UPF3A-205ENST00000479712 PLEKHH1Q9ULM0 1364 aa6.92□□□□□ -1.3
UPF3A-205ENST00000479712 WNK3Q9BYP7 1800 aa6.92□□□□□ -1.3
UPF3A-205ENST00000479712 TRPM1Q7Z4N2 1603 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 A0A0G2JLW4 131 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 TADA3O75528 432 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 SCGB1D2O95969 90 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 MT-CO1P00395 513 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 GJA4P35212 333 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 GDNFP39905 211 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 ARL4AP40617 200 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 TMEM132BQ14DG7 1078 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 PLCL1Q15111 1095 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 LRRC41Q15345 812 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 TIGD5Q53EQ6 642 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 ARTNQ5T4W7 220 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 GPR158Q5T848 1215 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 CC2D1AQ6P1N0 951 aaPredicted RBP6.91□□□□□ -1.3
UPF3A-205ENST00000479712 NFXL1Q6ZNB6 911 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 NLRX1Q86UT6 975 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 RBM12BQ8IXT5 1001 aaKnown RBP6.91□□□□□ -1.3
UPF3A-205ENST00000479712 LILRA2Q8N149 483 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 PHOSPHO1Q8TCT1 267 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 DLG3Q92796 817 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 SP110Q9HB58 689 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 ZFP64Q9NPA5 681 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 ACSS2Q9NR19 701 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 KCNH7Q9NS40 1196 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 C19orf73Q9NVV2 129 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 ZNF652Q9Y2D9 606 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 NOC2LQ9Y3T9 749 aaKnown RBP6.91□□□□□ -1.3
UPF3A-205ENST00000479712 PCDHB4Q9Y5E5 795 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 SPATA31E1Q6ZUB1 1445 aa6.91□□□□□ -1.3
UPF3A-205ENST00000479712 CLTCL1P53675 1640 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 THSD7BQ9C0I4 1608 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 LMO7Q8WWI1 1683 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 RASSF10A6NK89 507 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 CYP17A1P05093 508 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 RAC2P15153 192 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 PTPN1P18031 435 aaKnown RBP6.9□□□□□ -1.3
UPF3A-205ENST00000479712 PTX3P26022 381 aaPredicted RBP6.9□□□□□ -1.3
UPF3A-205ENST00000479712 TRHRP34981 398 aaPredicted RBP6.9□□□□□ -1.3
UPF3A-205ENST00000479712 EPHA5P54756 1037 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 TUSC3Q13454 348 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 SEC23AQ15436 765 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.9□□□□□ -1.3
UPF3A-205ENST00000479712 RASSF3Q86WH2 238 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 KRTAP19-1Q8IUB9 90 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 CHPFQ8IZ52 775 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 ZNF610Q8N9Z0 462 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 C8orf48Q96LL4 319 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 RIC8BQ9NVN3 520 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 ASH2LQ9UBL3 628 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 NUDT5Q9UKK9 219 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 ADAMTS6Q9UKP5 1117 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 SIT1Q9Y3P8 196 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 TELO2Q9Y4R8 837 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 PASKQ96RG2 1323 aa6.9□□□□□ -1.3
UPF3A-205ENST00000479712 CRB1P82279 1406 aa6.9□□□□□ -1.31
UPF3A-205ENST00000479712 QRICH2Q9H0J4 1663 aa6.9□□□□□ -1.31
UPF3A-205ENST00000479712 IFT172Q9UG01 1749 aa6.9□□□□□ -1.31
UPF3A-205ENST00000479712 KAT6BQ8WYB5 2073 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 GLTPD2A6NH11 291 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 BTBD11A6QL63 1104 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 BUB1BO60566 1050 aaPredicted RBP6.89□□□□□ -1.31
UPF3A-205ENST00000479712 LTFP02788 710 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 CCND1P24385 295 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 CD40P25942 277 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 INAVAQ3KP66 663 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 BTBD8Q5XKL5 378 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 ESRP1Q6NXG1 681 aaKnown RBP6.89□□□□□ -1.31
UPF3A-205ENST00000479712 TRIM48Q8IWZ4 208 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 TP53INP2Q8IXH6 220 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 SIRT2Q8IXJ6 389 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 ZZZ3Q8IYH5 903 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 AGBL5Q8NDL9 886 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 MYLIPQ8WY64 445 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 FUBP3Q96I24 572 aaKnown RBP eCLIP6.89□□□□□ -1.31
UPF3A-205ENST00000479712 RTFDC1Q9BY42 306 aaPredicted RBP6.89□□□□□ -1.31
UPF3A-205ENST00000479712 CDH19Q9H159 772 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 MS4A5Q9H3V2 200 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 ZMAT4Q9H898 229 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 RXFP1Q9HBX9 757 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 TOPORSQ9NS56 1045 aaPredicted RBP6.89□□□□□ -1.31
UPF3A-205ENST00000479712 STK26Q9P289 416 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 PALD1Q9ULE6 856 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 USP6P35125 1406 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 COL5A2P05997 1499 aaPredicted RBP6.89□□□□□ -1.31
UPF3A-205ENST00000479712 SBF1O95248 1867 aa6.89□□□□□ -1.31
UPF3A-205ENST00000479712 COL18A1P39060 1754 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 CEP162Q5TB80 1403 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 KRTAP4-8A0A0G2JLE6 195 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 PRAMEF25A6NGN4 478 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 FAM90A27PA6NNH2 459 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 SGSM2O43147 1006 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 SRGAP3O43295 1099 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 KDM1AO60341 852 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 DBHP09172 617 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 PNLIPP16233 465 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms