RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 JAMLQ86YT9 394 aa14.52□□□□□ -0.09
USP42-206ENST00000479544 RNF25Q96BH1 459 aaPredicted RBP14.52□□□□□ -0.09
USP42-206ENST00000479544 ANAPC7Q9UJX3 599 aa14.52□□□□□ -0.09
USP42-206ENST00000479544 CFAP73A6NFT4 308 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 TRPA1O75762 1119 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 PLS3P13797 630 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 USP11P51784 963 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 GPR162Q16538 588 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 LRRC23Q53EV4 343 aaPredicted RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 MDH1BQ5I0G3 518 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 SYCP2LQ5T4T6 812 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 CNPY4Q8N129 248 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 RSAD2Q8WXG1 361 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 KLF6Q99612 283 aaPredicted RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 KCNQ2O43526 872 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 KITP10721 976 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 CYP19A1P11511 503 aaPredicted RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 DESP17661 470 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 NSFP46459 744 aaKnown RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 ZNF844Q08AG5 666 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 DNAJC3Q13217 504 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 SLC30A9Q6PML9 568 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 RPUSD2Q8IZ73 545 aaKnown RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 SEMA4AQ9H3S1 761 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 FAM53CQ9NYF3 392 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 LARSQ9P2J5 1176 aaKnown RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 WTIPA6NIX2 430 aaPredicted RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 RWDD2BP57060 319 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 RASA3Q14644 834 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 KIF22Q14807 665 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 SLFN13Q68D06 897 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 ADGRA1Q86SQ6 560 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 PASD1Q8IV76 773 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 ELOA2Q8IYF1 753 aaPredicted RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 NAP1L4Q99733 375 aaKnown RBP14.51□□□□□ -0.09
USP42-206ENST00000479544 NRXN3Q9Y4C0 1643 aa14.51□□□□□ -0.09
USP42-206ENST00000479544 PODXLO00592 558 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 TARSP26639 723 aaKnown RBP14.5□□□□□ -0.09
USP42-206ENST00000479544 NMT1P30419 496 aaKnown RBP14.5□□□□□ -0.09
USP42-206ENST00000479544 DOK7Q18PE1 504 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 RNF207Q6ZRF8 634 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 PIP4K2CQ8TBX8 421 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 SMYD3Q9H7B4 428 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 RGL1Q9NZL6 768 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 LRRC10BA6NIK2 292 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 CLDN3O15551 220 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 CACNB3P54284 484 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 SATB1Q01826 763 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 KNOP1Q1ED39 458 aaKnown RBP14.5□□□□□ -0.09
USP42-206ENST00000479544 TMEM154Q6P9G4 183 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 PROM2Q8N271 834 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 SLC30A5Q8TAD4 765 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 GRK7Q8WTQ7 553 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 P3H4Q92791 437 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 FAM84BQ96KN1 310 aaPredicted RBP14.5□□□□□ -0.09
USP42-206ENST00000479544 C7orf25Q9BPX7 421 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 ERP44Q9BS26 406 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 NAGPAQ9UK23 515 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 MINPP1Q9UNW1 487 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 MAD1L1Q9Y6D9 718 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 USP17L10C9JJH3 530 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.5□□□□□ -0.09
USP42-206ENST00000479544 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.5□□□□□ -0.09
USP42-206ENST00000479544 JDP2Q8WYK2 163 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 ZFP69BQ9UJL9 534 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 ARL2BPQ9Y2Y0 163 aa14.5□□□□□ -0.09
USP42-206ENST00000479544 MAP3K7O43318 606 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 ATP6V1G2O95670 118 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 CSF1RP07333 972 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 MAN1A1P33908 653 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 CRYMQ14894 314 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 QPCTQ16769 361 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 FBXO11Q86XK2 927 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 RFFLQ8WZ73 363 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 MIEF2Q96C03 454 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 C18orf8Q96DM3 657 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 SH3GL3Q99963 347 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 RAB20Q9NX57 234 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 PPARGC1AQ9UBK2 798 aaKnown RBP14.49□□□□□ -0.09
USP42-206ENST00000479544 PPP1R9AQ9ULJ8 1098 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 MXI1P50539 228 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 CASP7P55210 303 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 EVX2Q03828 476 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 IRF2BP1Q8IU81 584 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 SLFN12Q8IYM2 578 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 KIAA0895Q8NCT3 520 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 SPDYE1Q8NFV5 336 aaPredicted RBP14.49□□□□□ -0.09
USP42-206ENST00000479544 CCDC124Q96CT7 223 aaKnown RBP14.49□□□□□ -0.09
USP42-206ENST00000479544 KLHL11Q9NVR0 708 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 KBTBD4Q9NVX7 518 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.49□□□□□ -0.09
USP42-206ENST00000479544 EPHB1P54762 984 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 MAP7Q14244 749 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 SPARCL1Q14515 664 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 GRAMD1BQ3KR37 738 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 LRIG3Q6UXM1 1119 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 CAVIN3Q969G5 261 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 GINM1Q9NU53 330 aa14.49□□□□□ -0.09
USP42-206ENST00000479544 CNOT8Q9UFF9 292 aaKnown RBP14.49□□□□□ -0.09
USP42-206ENST00000479544 PNPLA7Q6ZV29 1317 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms