RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 BARX2Q9UMQ3 279 aaPredicted RBP13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 KCNJ14Q9UNX9 436 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 FSD2A1L4K1 749 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ZNF623O75123 536 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 FGFR4P22455 802 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PSMC5P62195 406 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 STK3Q13188 491 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 MTERF2Q49AM1 385 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SPOUT1Q5T280 376 aaKnown RBP13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 CPLX2Q6PUV4 134 aaKnown RBP13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ZNF410Q86VK4 478 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 THNSL1Q8IYQ7 743 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 LRRC43Q8N309 656 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SH2D3AQ9BRG2 576 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 GCOM2Q9BZD3 368 aaPredicted RBP13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 IFT122Q9HBG6 1241 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ZDBF2Q9HCK1 2354 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NGRNQ9NPE2 291 aaKnown RBP13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 STK36Q9NRP7 1315 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 GJB4Q9NTQ9 266 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 DACT1Q9NYF0 836 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 WRAP73Q9P2S5 460 aaPredicted RBP13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TPCN1Q9ULQ1 816 aa13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 USP15Q9Y4E8 981 aaPredicted RBP13.77□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 A0A087WZ62 844 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 HIDE1A8MVS5 230 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TBX3O15119 743 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 FDPSP14324 419 aaKnown RBP13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 IBSPP21815 317 aaPredicted RBP13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PHKA2P46019 1235 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SPIRE1Q08AE8 756 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 EARS2Q5JPH6 523 aaKnown RBP13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SYCE2Q6PIF2 218 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SLC39A11Q8N1S5 342 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ZNF579Q8NAF0 562 aaKnown RBP13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 OXER1Q8TDS5 423 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 MICAL1Q8TDZ2 1067 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NLRP7Q8WX94 980 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 RSPH1Q8WYR4 309 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ZNF558Q96NG5 402 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 FDXACB1Q9BRP7 624 aaPredicted RBP13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 DHX33Q9H6R0 707 aaKnown RBP13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SPG21Q9NZD8 308 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SEPT9Q9UHD8 586 aaPredicted RBP13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 MUTYHQ9UIF7 546 aa13.76□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 DDX11L8A8MPP1 907 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NEFLP07196 543 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 GCFC2P16383 781 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PPM1AP35813 382 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PBX3P40426 434 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 QARSP47897 775 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 DNM2P50570 870 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ANAPC15P60006 121 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 LETM2Q2VYF4 491 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 HFE2Q6ZVN8 426 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 BMP8AQ7Z5Y6 402 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NEK8Q86SG6 692 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 KSR1Q8IVT5 923 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 MRPL43Q8N983 215 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 HELQQ8TDG4 1101 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 EDAQ92838 391 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TNFRSF25Q93038 417 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 TCF25Q9BQ70 676 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PHF7Q9BWX1 381 aaPredicted RBP13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 CYP26B1Q9NR63 512 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SUCLA2Q9P2R7 463 aaPredicted RBP13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PUF60Q9UHX1 559 aaKnown RBP13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PPME1Q9Y570 386 aa13.75□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 C2orf71A6NGG8 1288 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 CDKL5O76039 1030 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 P4HBP07237 508 aaKnown RBP13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 HOXA11P31270 313 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NPEPPSP55786 919 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PLPP4Q5VZY2 271 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ANKRD54Q6NXT1 300 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 RHPN2Q8IUC4 686 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 C4orf19Q8IY42 314 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ABI1Q8IZP0 508 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 JPH2Q9BR39 696 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 INO80BQ9C086 356 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 KCNH6Q9H252 994 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SLKQ9H2G2 1235 aaPredicted RBP13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 IRAK3Q9Y616 596 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ARID2Q68CP9 1835 aa13.74□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 CCDC194A0A1B0GVG4 234 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 MEIS3P2A8K0S8 358 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 DTNBO60941 627 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 OFD1O75665 1012 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 HOXB8P17481 243 aaPredicted RBP13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 SFPQP23246 707 aaKnown RBP eCLIP13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 BCAR1P56945 870 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 KRT17Q04695 432 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 EPHA7Q15375 998 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 PLA2G4FQ68DD2 849 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 MRPL10Q7Z7H8 261 aaKnown RBP13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 MRPL9Q9BYD2 267 aaKnown RBP13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 MINDY3Q9H8M7 445 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 FAM105AQ9NUU6 356 aa13.73□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 NT5C1B-RDH14C9J2C7 533 aa13.72□□□□□ -0.21
MSH5-SAPCD1-205ENST00000476085 ZBTB39O15060 712 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms