RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SMG7Q92540 1137 aaKnown RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 LRIG1Q96JA1 1093 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 PCYT2Q99447 389 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 UBA5Q9GZZ9 404 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 ELAC1Q9H777 363 aaKnown RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 ATP6V0A4Q9HBG4 840 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 C1orf112Q9NSG2 853 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 ZNF215Q9UL58 517 aaPredicted RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 ST3GAL5Q9UNP4 418 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 EVPLQ92817 2033 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 RELNP78509 3460 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 ATG2BQ96BY7 2078 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 ABCB11O95342 1321 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 WDR81Q562E7 1941 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 MTCL1Q9Y4B5 1905 aaKnown RBP5.59□□□□□ -1.51
USP4-209ENST00000475873 GSTTP1A0A1W2PQM5 241 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 DENND3A2RUS2 1198 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 SPATA31C2B4DYI2 1134 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 PYCARD-AS1I3L0S3 204 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 ARHGAP6O43182 974 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 EPN2O95208 641 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 CFBP00751 764 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 HSPD1P10809 573 aaKnown RBP5.59□□□□□ -1.51
USP4-209ENST00000475873 INSRRP14616 1297 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 TCF7P36402 384 aaPredicted RBP5.59□□□□□ -1.51
USP4-209ENST00000475873 RAP1GAPP47736 663 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 TDO2P48775 406 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 NRLP54845 237 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 NTHL1P78549 312 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 CTDSPL2Q05D32 466 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 PPARAQ07869 468 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 QRICH1Q2TAL8 776 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 IER5Q5VY09 327 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 HEATR6Q6AI08 1181 aaKnown RBP5.59□□□□□ -1.51
USP4-209ENST00000475873 KCNV1Q6PIU1 500 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 DDX53Q86TM3 631 aaKnown RBP5.59□□□□□ -1.51
USP4-209ENST00000475873 ZNF598Q86UK7 904 aaKnown RBP5.59□□□□□ -1.51
USP4-209ENST00000475873 KBTBD6Q86V97 674 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 ZNF843Q8N446 348 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 RHPN1Q8TCX5 695 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 STAMQ92783 540 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 IGSF21Q96ID5 467 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 INPP4AQ96PE3 977 aaPredicted RBP5.59□□□□□ -1.51
USP4-209ENST00000475873 KXD1Q9BQD3 176 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 PLA2G2FQ9BZM2 168 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 HEBP1Q9NRV9 189 aa5.59□□□□□ -1.51
USP4-209ENST00000475873 NDRG2Q9UN36 371 aaKnown RBP5.59□□□□□ -1.51
USP4-209ENST00000475873 GON4LQ3T8J9 2241 aa5.59□□□□□ -1.52
USP4-209ENST00000475873 LNP1A1A4G5 178 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 FAM221BA6H8Z2 402 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 TSPY2A6NKD2 308 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 SPDYE4A6NLX3 237 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 EIF4E1BA6NMX2 242 aaKnown RBP5.58□□□□□ -1.52
USP4-209ENST00000475873 CDX4O14627 284 aaPredicted RBP5.58□□□□□ -1.52
USP4-209ENST00000475873 RPS6KA5O75582 802 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 SSBP05455 408 aaKnown RBP eCLIP5.58□□□□□ -1.52
USP4-209ENST00000475873 SPATA31D3P0C874 917 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 TOP1P11387 765 aaKnown RBP5.58□□□□□ -1.52
USP4-209ENST00000475873 CEACAM1P13688 526 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 ATP5JP18859 108 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 CSRP1P21291 193 aaKnown RBP5.58□□□□□ -1.52
USP4-209ENST00000475873 KLRC2P26717 231 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 MPLP40238 635 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 POLGP54098 1239 aaPredicted RBP5.58□□□□□ -1.52
USP4-209ENST00000475873 KRT76Q01546 638 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 SCAPQ12770 1279 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 PLCB4Q15147 1175 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 SPATA31D4Q6ZUB0 917 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 PPFIBP1Q86W92 1011 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 ECHDC2Q86YB7 292 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 TRMT2AQ8IZ69 625 aaKnown RBP5.58□□□□□ -1.52
USP4-209ENST00000475873 ABCA7Q8IZY2 2146 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 TMEM57Q8N5G2 664 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 DEFB124Q8NES8 71 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 HELQQ8TDG4 1101 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 ARHGAP45Q92619 1136 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 CLUAP1Q96AJ1 413 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 TMEM169Q96HH4 297 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 PPP1R16BQ96T49 567 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 SEC62Q99442 399 aaKnown RBP5.58□□□□□ -1.52
USP4-209ENST00000475873 EDEM2Q9BV94 578 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.58□□□□□ -1.524e-7■■■■□ 23.1
USP4-209ENST00000475873 MAF1Q9H063 256 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 NT5C3AQ9H0P0 336 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 ZNF287Q9HBT7 754 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.58□□□□□ -1.52
USP4-209ENST00000475873 DNAJB4Q9UDY4 337 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 PNMA2Q9UL42 364 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 GINS2Q9Y248 185 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 RAXQ9Y2V3 346 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 PCDHA2Q9Y5H9 948 aa5.58□□□□□ -1.52
USP4-209ENST00000475873 NUP205Q92621 2012 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 FRMPD4Q14CM0 1322 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 SPAARA0A1B0GVQ0 90 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 MEIS3P2A8K0S8 358 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 TEX28O15482 410 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 ATP9AO75110 1047 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 ZC3H11AO75152 810 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP4-209ENST00000475873 GALTP07902 379 aa5.57□□□□□ -1.52
USP4-209ENST00000475873 CHRNB1P11230 501 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms