RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 DGCR14Q96DF8 476 aaKnown RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 BTBD3Q9Y2F9 522 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 SNX24Q9Y343 169 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 STAM2O75886 525 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CHRM1P11229 460 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 TAB1Q15750 504 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 ZNF827Q17R98 1081 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 KDM7AQ6ZMT4 941 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 RBM46Q8TBY0 533 aaKnown RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 UBASH3BQ8TF42 649 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 NSL1Q96IY1 281 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 ESYT3A0FGR9 886 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 KCNJ6P48051 423 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 MAPRE2Q15555 327 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 CCNI2Q6ZMN8 369 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-210ENST00000473258 WAPLQ7Z5K2 1190 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 GRPEL2Q8TAA5 225 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 OTUD5Q96G74 571 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 KLHL4Q9C0H6 718 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 SENP1Q9P0U3 644 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 MAP3K19Q56UN5 1328 aa9.55□□□□□ -0.88
COL6A3-210ENST00000473258 AFPP02771 609 aaKnown RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 KITP10721 976 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 NR1D2Q14995 579 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 IQCF2Q8IXL9 164 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 CLEC4FQ8N1N0 589 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 PYROXD1Q8WU10 500 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 SIPA1Q96FS4 1042 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 LZTS2Q9BRK4 669 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 ZCWPW1Q9H0M4 648 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 C19orf44Q9H6X5 657 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 METTL5Q9NRN9 209 aaKnown RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 CTNNAL1Q9UBT7 734 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 SFMBT1Q9UHJ3 866 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 SH3D21A4FU49 640 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 LDHCP07864 332 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 PIK3CAP42336 1068 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 NAPAP54920 295 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 ZBED6P86452 979 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 DDR1Q08345 913 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 MAPRE1Q15691 268 aaKnown RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 KIF19Q2TAC6 998 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 DIS3L2Q8IYB7 885 aaKnown RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 C19orf18Q8NEA5 215 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 RASSF5Q8WWW0 418 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 PRG3Q9Y2Y8 225 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 M0R2C6 588 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 TRIM13O60858 407 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 ATP2B4P23634 1241 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 GALK1P51570 392 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 GRSF1Q12849 480 aaKnown RBP eCLIP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 PLEKHO1Q53GL0 409 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 SLC10A5Q5PT55 438 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 WASHC2DQ5SRD0 308 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 TBC1D9BQ66K14 1250 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 SPOPLQ6IQ16 392 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 AKAP14Q86UN6 197 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 CCDC85AQ96PX6 553 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 GIN1Q9NXP7 522 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 UBAP1LF5GYI3 381 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 CPP00450 1065 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 IFNA16P05015 189 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 ITGAXP20702 1163 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 CIITAP33076 1130 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 YWHAEP62258 255 aaKnown RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 MCL1Q07820 350 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 MARK2Q7KZI7 788 aaKnown RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 CHST3Q7LGC8 479 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 TBATAQ96M53 351 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 SPRTNQ9H040 489 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 FBXO28Q9NVF7 368 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 ZNF224Q9NZL3 707 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 TRMT6Q9UJA5 497 aaKnown RBP9.54□□□□□ -0.88
COL6A3-210ENST00000473258 PCDHA5Q9Y5H7 936 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 IL16Q14005 1332 aa9.54□□□□□ -0.88
COL6A3-210ENST00000473258 SLC5A1P13866 664 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 MFAP3P55082 362 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 PLOD1Q02809 727 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 HADHQ16836 314 aaKnown RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ANO4Q32M45 955 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 HMBOX1Q6NT76 420 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 TXNDC2Q86VQ3 553 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 SLF2Q8IX21 1173 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 PDIK1LQ8N165 341 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 MDM1Q8TC05 714 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ENKURQ8TC29 256 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 NHEJ1Q9H9Q4 299 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 MOV10Q9HCE1 1003 aaKnown RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 PCDHA13Q9Y5I0 950 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 RAD54L2Q9Y4B4 1467 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ARHGEF37A1IGU5 675 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 SGK1O00141 431 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 FKBP6O75344 327 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 ALBP02768 609 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 FESP07332 822 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 NUP62P37198 522 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-210ENST00000473258 BCAP31P51572 246 aa9.53□□□□□ -0.88
COL6A3-210ENST00000473258 NDUFA8P51970 172 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms