RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 IFT122Q9HBG6 1241 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 C11orf16Q9NQ32 467 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 ARID2Q68CP9 1835 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 A0A0U1RQF3 1178 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 TBX3O15119 743 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 COL9A1P20849 921 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 NRIP1P48552 1158 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 C8orf34Q49A92 452 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 CCDC83Q8IWF9 413 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 GJD3Q8N144 294 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 VN1R2Q8NFZ6 395 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 HELQQ8TDG4 1101 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 CEP170P1Q96L14 293 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 GCOM2Q9BZD3 368 aaPredicted RBP18.68■□□□□ 0.58
USP40-212ENST00000473191 TMEM117Q9H0C3 514 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 DHX33Q9H6R0 707 aaKnown RBP18.68■□□□□ 0.58
USP40-212ENST00000473191 MINDY3Q9H8M7 445 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 CLEC1BQ9P126 229 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 PCDHB12Q9Y5F1 795 aa18.68■□□□□ 0.58
USP40-212ENST00000473191 FAM86C2PA6NEL3 165 aa18.67■□□□□ 0.58
USP40-212ENST00000473191 MBTPS2O43462 519 aa18.67■□□□□ 0.58
USP40-212ENST00000473191 MARCH6O60337 910 aa18.67■□□□□ 0.58
USP40-212ENST00000473191 SLITRK3O94933 977 aa18.67■□□□□ 0.58
USP40-212ENST00000473191 YWHABP31946 246 aaKnown RBP18.67■□□□□ 0.58
USP40-212ENST00000473191 C4orf19Q8IY42 314 aa18.67■□□□□ 0.58
USP40-212ENST00000473191 THNSL1Q8IYQ7 743 aa18.67■□□□□ 0.58
USP40-212ENST00000473191 TMEM60Q9H2L4 133 aa18.67■□□□□ 0.58
USP40-212ENST00000473191 BARX2Q9UMQ3 279 aaPredicted RBP18.67■□□□□ 0.58
USP40-212ENST00000473191 DNM2P50570 870 aa18.66■□□□□ 0.58
USP40-212ENST00000473191 TPH2Q8IWU9 490 aa18.66■□□□□ 0.58
USP40-212ENST00000473191 MICAL1Q8TDZ2 1067 aa18.66■□□□□ 0.58
USP40-212ENST00000473191 PRPF31Q8WWY3 499 aaKnown RBP18.66■□□□□ 0.58
USP40-212ENST00000473191 MSLNLQ96KJ4 702 aa18.66■□□□□ 0.58
USP40-212ENST00000473191 EIF2AK1Q9BQI3 630 aaKnown RBP18.66■□□□□ 0.58
USP40-212ENST00000473191 XPNPEP1Q9NQW7 623 aa18.66■□□□□ 0.58
USP40-212ENST00000473191 TLR9Q9NR96 1032 aa18.66■□□□□ 0.58
USP40-212ENST00000473191 PIN4Q9Y237 131 aaKnown RBP18.66■□□□□ 0.58
USP40-212ENST00000473191 COL4A3BPQ9Y5P4 624 aa18.66■□□□□ 0.58
USP40-212ENST00000473191 NT5C1B-RDH14C9J2C7 533 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 FSCN2O14926 492 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 SRGAP2CP0DJJ0 459 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 ATP2B1P20020 1258 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 SSTR3P32745 418 aaPredicted RBP18.65■□□□□ 0.58
USP40-212ENST00000473191 TXKP42681 527 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 PHKA2P46019 1235 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 POLGP54098 1239 aaPredicted RBP18.65■□□□□ 0.58
USP40-212ENST00000473191 ZP2Q05996 745 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 CALCRLQ16602 461 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 XKR9Q5GH70 373 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 KCNT2Q6UVM3 1135 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 ZNF410Q86VK4 478 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 MTMR9Q96QG7 549 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 TTC12Q9H892 705 aaPredicted RBP18.65■□□□□ 0.58
USP40-212ENST00000473191 BRMS1Q9HCU9 246 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 AAASQ9NRG9 546 aa18.65■□□□□ 0.58
USP40-212ENST00000473191 POTEMA6NI47 508 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 HIDE1A8MVS5 230 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 B4GALT3O60512 393 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 LAG3P18627 525 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 NDUFV1P49821 464 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 AFF1P51825 1210 aaKnown RBP18.64■□□□□ 0.57
USP40-212ENST00000473191 EMC2Q15006 297 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 PLPP4Q5VZY2 271 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 TWF2Q6IBS0 349 aaKnown RBP18.64■□□□□ 0.57
USP40-212ENST00000473191 FAM43BQ6ZT52 329 aaPredicted RBP18.64■□□□□ 0.57
USP40-212ENST00000473191 TMEM173Q86WV6 379 aaPredicted RBP18.64■□□□□ 0.57
USP40-212ENST00000473191 SLFN12Q8IYM2 578 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 ABI1Q8IZP0 508 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 ZNF710Q8N1W2 664 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 LRRC43Q8N309 656 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 EFHBQ8N7U6 833 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 SLC7A3Q8WY07 619 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 NAP1L4Q99733 375 aaKnown RBP18.64■□□□□ 0.57
USP40-212ENST00000473191 HSD17B14Q9BPX1 270 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 PCDHA12Q9UN75 941 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 LIMCH1Q9UPQ0 1083 aa18.64■□□□□ 0.57
USP40-212ENST00000473191 PI4K2BG5E9Z4 385 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 NCK2O43639 380 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 NEMFO60524 1076 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 BAG4O95429 457 aaKnown RBP18.63■□□□□ 0.57
USP40-212ENST00000473191 EOMESO95936 686 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 SFPQP23246 707 aaKnown RBP eCLIP18.63■□□□□ 0.57
USP40-212ENST00000473191 PLCB3Q01970 1234 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 LAMTOR4Q0VGL1 99 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 SMAD2Q15796 467 aaKnown RBP18.63■□□□□ 0.57
USP40-212ENST00000473191 PUS10Q3MIT2 529 aaKnown RBP18.63■□□□□ 0.57
USP40-212ENST00000473191 CATSPER4Q7RTX7 472 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 PIGOQ8TEQ8 1089 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 MRPS27Q92552 414 aaKnown RBP18.63■□□□□ 0.57
USP40-212ENST00000473191 LRFN3Q9BTN0 628 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 ZSWIM4Q9H7M6 989 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 TLE6Q9H808 572 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 CHST12Q9NRB3 414 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 FAM105AQ9NUU6 356 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 RNF216Q9NWF9 866 aaPredicted RBP18.63■□□□□ 0.57
USP40-212ENST00000473191 DACT1Q9NYF0 836 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 CD207Q9UJ71 328 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 BDP1A6H8Y1 2624 aa18.63■□□□□ 0.57
USP40-212ENST00000473191 C19orf67A6NJJ6 358 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 HOXA2O43364 376 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms