RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 POTEMA6NI47 508 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 DGAT1O75907 488 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 SPATA31C1P0DKV0 1188 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 LAMTOR4Q0VGL1 99 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 SRGAP1Q7Z6B7 1085 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 ZNF598Q86UK7 904 aaKnown RBP13.34□□□□□ -0.27
SYNE1-221ENST00000472563 C4orf32Q8N8J7 132 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 KLHL23Q8NBE8 558 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 POLR3CQ9BUI4 534 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-221ENST00000472563 NSUN3Q9H649 340 aaKnown RBP13.34□□□□□ -0.27
SYNE1-221ENST00000472563 XPNPEP1Q9NQW7 623 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 AAASQ9NRG9 546 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 RNF19AQ9NV58 838 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 TYW1Q9NV66 732 aaKnown RBP13.34□□□□□ -0.27
SYNE1-221ENST00000472563 PTPRSQ13332 1948 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 MYO9BQ13459 2157 aa13.34□□□□□ -0.27
SYNE1-221ENST00000472563 GBF1Q92538 1859 aa13.33□□□□□ -0.27
SYNE1-221ENST00000472563 NCK2O43639 380 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 ITGB1P05556 798 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 SRGAP2CP0DJJ0 459 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 SKIP12755 728 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 TECP42680 631 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 RARRES1P49788 294 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 TOB1P50616 345 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-221ENST00000472563 POU5F1BQ06416 359 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 CAMK1Q14012 370 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 MXD4Q14582 209 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-221ENST00000472563 COL19A1Q14993 1142 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 CSPP1Q1MSJ5 1256 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 TCEAL5Q5H9L2 206 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 CATSPER4Q7RTX7 472 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 FERMT3Q86UX7 667 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 CATSPER3Q86XQ3 398 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 ERMNQ8TAM6 284 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 SPPL3Q8TCT6 385 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 ADAMTS19Q8TE59 1207 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 RSPH1Q8WYR4 309 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 CCDC43Q96MW1 224 aaKnown RBP13.33□□□□□ -0.28
SYNE1-221ENST00000472563 CASD1Q96PB1 797 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 NACC1Q96RE7 527 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 MTRQ99707 1265 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 UBE2ZQ9H832 354 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-221ENST00000472563 ALG13Q9NP73 1137 aaKnown RBP13.33□□□□□ -0.28
SYNE1-221ENST00000472563 BMP2KQ9NSY1 1161 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-221ENST00000472563 PCDHB12Q9Y5F1 795 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 KAT6AQ92794 2004 aa13.33□□□□□ -0.28
SYNE1-221ENST00000472563 TTC3P53804 2025 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 ZNF623O75123 536 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 MED24O75448 989 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 ATF7P17544 494 aaPredicted RBP13.32□□□□□ -0.28
SYNE1-221ENST00000472563 LAG3P18627 525 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 RPA1P27694 616 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 PHKA2P46019 1235 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 FXR2P51116 673 aaKnown RBP eCLIP13.32□□□□□ -0.28
SYNE1-221ENST00000472563 RAB27AP51159 221 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 KCNQ1P51787 676 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 TFDP1Q14186 410 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 PDIA5Q14554 519 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 PCBP1Q15365 356 aaKnown RBP eCLIP13.32□□□□□ -0.28
SYNE1-221ENST00000472563 SPOUT1Q5T280 376 aaKnown RBP13.32□□□□□ -0.28
SYNE1-221ENST00000472563 IFNLR1Q8IU57 520 aaPredicted RBP13.32□□□□□ -0.28
SYNE1-221ENST00000472563 ABI1Q8IZP0 508 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 RNF149Q8NC42 400 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 RNF169Q8NCN4 708 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 PIGOQ8TEQ8 1089 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 CWH43Q9H720 699 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 MINDY3Q9H8M7 445 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 AGPAT5Q9NUQ2 364 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 DBR1Q9UK59 544 aaKnown RBP13.32□□□□□ -0.28
SYNE1-221ENST00000472563 PIN4Q9Y237 131 aaKnown RBP13.32□□□□□ -0.28
SYNE1-221ENST00000472563 SIP14410 1827 aa13.32□□□□□ -0.28
SYNE1-221ENST00000472563 XIRP2A4UGR9 3374 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 SPTBN5Q9NRC6 3674 aaKnown RBP13.31□□□□□ -0.28
SYNE1-221ENST00000472563 A0A087WWV3 80 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 LAD1O00515 517 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 MUTP22033 750 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 DNAJB1P25685 340 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 GJB2P29033 226 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 HOXA11P31270 313 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-221ENST00000472563 ARL2P36404 184 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 PTENP60484 403 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 UBE3AQ05086 875 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 PTGDRQ13258 359 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 NBR1Q14596 966 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 LEXMQ3ZCV2 418 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 CLLU1OSQ5K130 101 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 HAUS3Q68CZ6 603 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 TWF2Q6IBS0 349 aaKnown RBP13.31□□□□□ -0.28
SYNE1-221ENST00000472563 LRRC55Q6ZSA7 311 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 LRRC43Q8N309 656 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 COLGALT1Q8NBJ5 622 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 POF1BQ8WVV4 589 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 PABPC5Q96DU9 382 aaKnown RBP13.31□□□□□ -0.28
SYNE1-221ENST00000472563 FAM105AQ9NUU6 356 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 LRWD1Q9UFC0 647 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-221ENST00000472563 PCDHB6Q9Y5E3 794 aa13.31□□□□□ -0.28
SYNE1-221ENST00000472563 REV3LO60673 3130 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 FGF18O76093 207 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 KCNA5P22460 613 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms