RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ETV4	P43268	484 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	LINC00310	P59036	64 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	PPP2R5A	Q15172	486 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	EFCAB2	Q5VUJ9	269 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	TRIM68	Q6AZZ1	485 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	REXO1L1P	Q8IX06	675 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	CMTR2	Q8IYT2	770 aa	Known RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	TSPEAR	Q8WU66	669 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	NKD2	Q969F2	451 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	AJUBA	Q96IF1	538 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	PAWR	Q96IZ0	340 aa	Known RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	TEKT5	Q96M29	485 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	NUP88	Q99567	741 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	SOX7	Q9BT81	388 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	L2HGDH	Q9H9P8	463 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	IFT122	Q9HBG6	1241 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	LUC7L	Q9NQ29	371 aa	Known RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	POLR3B	Q9NW08	1133 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	SAE1	Q9UBE0	346 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	DPP7	Q9UHL4	492 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	EVL	Q9UI08	416 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	PNMA8B	Q9ULN7	279 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	INVS	Q9Y283	1065 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	ANKRD6	Q9Y2G4	727 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	GIT1	Q9Y2X7	761 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	VWA7	Q9Y334	891 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	C9orf118	A6NHY6	69 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	DDX3X	O00571	662 aa	Known RBP eCLIP	5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	XPOT	O43592	962 aa	Known RBP	5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	XPA	P23025	273 aa	Predicted RBP	5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	ADCY8	P40145	1251 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	SARS	P49591	514 aa	Known RBP	5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	PPARA	Q07869	468 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	CLUL1	Q15846	466 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	MAN2A1	Q16706	1144 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	FAM26F	Q5R3K3	315 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZNF648	Q5T619	568 aa	Predicted RBP	5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	MBNL2	Q5VZF2	373 aa	Known RBP	5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	NXN	Q6DKJ4	435 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044		Q6ZUG5	572 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	OTOP2	Q7RTS6	562 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	FMNL3	Q8IVF7	1028 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	TMEM151B	Q8IW70	566 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	IFNL2	Q8IZJ0	200 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	CARF	Q8N187	725 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	LINC01356	Q8N9X3	169 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	NUDT10	Q8NFP7	164 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	FATE1	Q969F0	183 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	NUDT11	Q96G61	164 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	DYDC2	Q96IM9	177 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	IP6K2	Q9UHH9	426 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	SCOC	Q9UIL1	159 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZNF180	Q9UJW8	692 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	USP18	Q9UMW8	372 aa		5.09	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZRANB2	O95218	330 aa	Known RBP eCLIP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	SCGB1D2	O95969	90 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	U2AF1L5	P0DN76	240 aa	Predicted RBP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	OSM	P13725	252 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	RAP1GAP	P47736	663 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	AFF3	P51826	1226 aa	Known RBP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	ADK	P55263	362 aa	Known RBP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	SESN2	P58004	480 aa	Predicted RBP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	U2AF1	Q01081	240 aa	Known RBP eCLIP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	LRRC41	Q15345	812 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	ZNF827	Q17R98	1081 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	FAM102B	Q5T8I3	360 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	GAREM2	Q75VX8	874 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	GLB1L2	Q8IW92	636 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	TCEAL8	Q8IYN2	117 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	CHPF	Q8IZ52	775 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	KLHL36	Q8N4N3	616 aa		5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	JPH3	Q8WXH2	748 aa	Predicted RBP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	GFM2	Q969S9	779 aa	Known RBP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	FDXACB1	Q9BRP7	624 aa	Predicted RBP	5.08	□□□□□ -1.6
PTCD3-209	ENST00000472044	NDUFS2	O75306	463 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	FSBP	O95073	299 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	HMGCR	P04035	888 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	C5AR1	P21730	350 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	AKAP5	P24588	427 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	WAS	P42768	502 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	NRG3	P56975	720 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	MEF2A	Q02078	507 aa	Predicted RBP	5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	MALL	Q13021	153 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	ACAP2	Q15057	778 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	ADRM1	Q16186	407 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	CXorf57	Q6NSI4	855 aa	Known RBP	5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	KLHDC10	Q6PID8	442 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	BTNL9	Q6UXG8	535 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	TP53I13	Q8NBR0	393 aa	Predicted RBP	5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	TXNDC5	Q8NBS9	432 aa	Known RBP	5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	ADAMTS17	Q8TE56	1095 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	TSR2	Q969E8	191 aa	Known RBP	5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	HSPBAP1	Q96EW2	488 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	WDR92	Q96MX6	357 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	SPATA25	Q9BR10	227 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	CARD11	Q9BXL7	1154 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	ACE2	Q9BYF1	805 aa	Predicted RBP	5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	TMEM168	Q9H0V1	697 aa		5.07	□□□□□ -1.6
PTCD3-209	ENST00000472044	BARX1	Q9HBU1	254 aa	Predicted RBP	5.07	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms