RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 SKILP12757 684 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 HOXD8P13378 290 aaPredicted RBP10.3□□□□□ -0.76
VPS52-216ENST00000471309 ARL2P36404 184 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 NAMPTP43490 491 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 PLCB4Q15147 1175 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 PPP2R5AQ15172 486 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 FIGNQ5HY92 759 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 IQSEC1Q6DN90 963 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 CYP4F22Q6NT55 531 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 PAXIP1Q6ZW49 1069 aaPredicted RBP10.3□□□□□ -0.76
VPS52-216ENST00000471309 SYCP3Q8IZU3 236 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 TC2NQ8N9U0 490 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 TMEM161BQ8NDZ6 487 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 BSNDQ8WZ55 320 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 IFT74Q96LB3 600 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 PANX2Q96RD6 677 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 TMX1Q9H3N1 280 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 DMAC2Q9NW81 257 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 ERAP1Q9NZ08 941 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 ARHGAP28Q9P2N2 729 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 ARMCX3Q9UH62 379 aaPredicted RBP10.3□□□□□ -0.76
VPS52-216ENST00000471309 TBX20Q9UMR3 447 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.3□□□□□ -0.76
VPS52-216ENST00000471309 ADGRA3Q8IWK6 1321 aa10.3□□□□□ -0.76
VPS52-216ENST00000471309 COL1A2P08123 1366 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 CASP8AP2Q9UKL3 1982 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 IGKV6-21A0A0C4DH24 114 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.29□□□□□ -0.76
VPS52-216ENST00000471309 DENND3A2RUS2 1198 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 ZBTB42B2RXF5 422 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 HBP1O60381 514 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 SMPD1P17405 629 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 FECHP22830 423 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 CASP14P31944 242 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 PSMC2P35998 433 aaKnown RBP10.29□□□□□ -0.76
VPS52-216ENST00000471309 FCGRTP55899 365 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 SOX10P56693 466 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 RBL2Q08999 1139 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 TBC1D8BQ0IIM8 1120 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 SYCP1Q15431 976 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 CEP135Q66GS9 1140 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 TMEM139Q8IV31 216 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 KSR1Q8IVT5 923 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 ASAP3Q8TDY4 903 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 AFG1LQ8WV93 481 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 ZIC5Q96T25 663 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 JPH2Q9BR39 696 aaPredicted RBP10.29□□□□□ -0.76
VPS52-216ENST00000471309 NUP58Q9BVL2 599 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 TTYH3Q9C0H2 523 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 RRAGDQ9NQL2 400 aaPredicted RBP10.29□□□□□ -0.76
VPS52-216ENST00000471309 CREBZFQ9NS37 354 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 FLRT1Q9NZU1 646 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 GJD2Q9UKL4 321 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 TRPC6Q9Y210 931 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 PHLPP2Q6ZVD8 1323 aa10.29□□□□□ -0.76
VPS52-216ENST00000471309 A0A1W2PQJ5 194 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 CLIC2O15247 247 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 MAPK13O15264 365 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 PPFIA4O75335 1185 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 MMP3P08254 477 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 ZNF865P0CJ78 1059 aaPredicted RBP10.28□□□□□ -0.76
VPS52-216ENST00000471309 XRCC5P13010 732 aaKnown RBP10.28□□□□□ -0.76
VPS52-216ENST00000471309 GLRA2P23416 452 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 MARK3P27448 753 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 CLCN1P35523 988 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 CASP4P49662 377 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 FXR1P51114 621 aaKnown RBP eCLIP10.28□□□□□ -0.76
VPS52-216ENST00000471309 ADKP55263 362 aaKnown RBP10.28□□□□□ -0.76
VPS52-216ENST00000471309 LACTBP83111 547 aaPredicted RBP10.28□□□□□ -0.76
VPS52-216ENST00000471309 TNFAIP2Q03169 654 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 GRM1Q13255 1194 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 ZNF484Q5JVG2 852 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 GJC2Q5T442 439 aaPredicted RBP10.28□□□□□ -0.76
VPS52-216ENST00000471309 FAM186BQ8IYM0 893 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 OR6J1Q8NGC5 347 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 TCP11Q8WWU5 503 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 BORCS6Q96GS4 357 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 BAG1Q99933 345 aaPredicted RBP10.28□□□□□ -0.76
VPS52-216ENST00000471309 C16orf70Q9BSU1 422 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 KIFC3Q9BVG8 833 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 NAA15Q9BXJ9 866 aaKnown RBP10.28□□□□□ -0.76
VPS52-216ENST00000471309 CFHR5Q9BXR6 569 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 IKZF4Q9H2S9 585 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 KCND1Q9NSA2 647 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 ABHD10Q9NUJ1 306 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 SPTLC3Q9NUV7 552 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 ZNF215Q9UL58 517 aaPredicted RBP10.28□□□□□ -0.76
VPS52-216ENST00000471309 SIK3Q9Y2K2 1263 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 FRMD4BQ9Y2L6 1034 aa10.28□□□□□ -0.76
VPS52-216ENST00000471309 A6NJR5 290 aa10.27□□□□□ -0.77
VPS52-216ENST00000471309 ARHGAP6O43182 974 aa10.27□□□□□ -0.77
VPS52-216ENST00000471309 ADCY6O43306 1168 aa10.27□□□□□ -0.77
VPS52-216ENST00000471309 STX10O60499 249 aa10.27□□□□□ -0.77
VPS52-216ENST00000471309 C22orf31O95567 290 aa10.27□□□□□ -0.77
VPS52-216ENST00000471309 PIGRP01833 764 aa10.27□□□□□ -0.77
VPS52-216ENST00000471309 AFPP02771 609 aaKnown RBP10.27□□□□□ -0.77
VPS52-216ENST00000471309 TRIM21P19474 475 aaKnown RBP10.27□□□□□ -0.77
VPS52-216ENST00000471309 CYP2B6P20813 491 aa10.27□□□□□ -0.77
VPS52-216ENST00000471309 CTGFP29279 349 aa10.27□□□□□ -0.77
VPS52-216ENST00000471309 CYP2J2P51589 502 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms