RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 DCTN4Q9UJW0 460 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 ABCB11O95342 1321 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 HMGB1P1B2RPK0 211 aaPredicted RBP11.53□□□□□ -0.56
CHD3-208ENST00000470531 CLDN3O15551 220 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 NAB2Q15742 525 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 SPRED3Q2MJR0 410 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 PPP1R21Q6ZMI0 780 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 OGFOD1Q8N543 542 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 SLC17A8Q8NDX2 589 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 SLC20A1Q8WUM9 679 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 SH3GL2Q99962 352 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.53□□□□□ -0.56
CHD3-208ENST00000470531 PRDM16Q9HAZ2 1276 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 SH3GLB2Q9NR46 395 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 TAS2R14Q9NYV8 317 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 NR2E1Q9Y466 385 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 RGPD5Q99666 1765 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 TCP11X1B4DZS4 312 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 SOX10P56693 466 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 MTMR3Q13615 1198 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 RBBP5Q15291 538 aaKnown RBP11.53□□□□□ -0.56
CHD3-208ENST00000470531 CTAGE3PQ8IX95 158 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 MMGT1Q8N4V1 131 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 C4orf32Q8N8J7 132 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 TRIM6Q9C030 488 aaPredicted RBP11.53□□□□□ -0.56
CHD3-208ENST00000470531 GPRC5CQ9NQ84 441 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 FGFR1OP2Q9NVK5 253 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 PPP1R9AQ9ULJ8 1098 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 EMSYQ7Z589 1322 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 TLR2O60603 784 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 SHBGP04278 402 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 MYL1P05976 194 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 CETN2P41208 172 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 DCUN1D2Q6PH85 259 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 CCDC137Q6PK04 289 aaKnown RBP11.53□□□□□ -0.56
CHD3-208ENST00000470531 RAPGEF5Q92565 580 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 KAT5Q92993 513 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 ZKSCAN4Q969J2 545 aaPredicted RBP11.53□□□□□ -0.56
CHD3-208ENST00000470531 EIF2AK1Q9BQI3 630 aaKnown RBP11.53□□□□□ -0.56
CHD3-208ENST00000470531 SEMA4AQ9H3S1 761 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 AGTPBP1Q9UPW5 1226 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 IKBKGQ9Y6K9 419 aa11.53□□□□□ -0.56
CHD3-208ENST00000470531 A0A1B0GUA9 196 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 FOXN3O00409 490 aaPredicted RBP11.52□□□□□ -0.56
CHD3-208ENST00000470531 KRT19P08727 400 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 PMS2P54278 862 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 KYNUQ16719 465 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 CHADLQ6NUI6 762 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 CYFIP1Q7L576 1253 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 SLC40A1Q9NP59 571 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 DDX4Q9NQI0 724 aaKnown RBP11.52□□□□□ -0.56
CHD3-208ENST00000470531 SWAP70Q9UH65 585 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 ANAPC7Q9UJX3 599 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 SIK3Q9Y2K2 1263 aa11.52□□□□□ -0.56
CHD3-208ENST00000470531 PIK3R2O00459 728 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 HNRNPDLO14979 420 aaKnown RBP11.52□□□□□ -0.57
CHD3-208ENST00000470531 MARCKSL1P49006 195 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 ZNF543Q08ER8 600 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 QPCTQ16769 361 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 SEZ6Q53EL9 994 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 SWT1Q5T5J6 900 aaKnown RBP11.52□□□□□ -0.57
CHD3-208ENST00000470531 NAP1L3Q99457 506 aaPredicted RBP11.52□□□□□ -0.57
CHD3-208ENST00000470531 USP21Q9UK80 565 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 LEMD3Q9Y2U8 911 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 ECM29Q5VYK3 1845 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 POTEJP0CG39 1038 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 PON1P27169 355 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 MAPK4P31152 587 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 LACTBP83111 547 aaPredicted RBP11.52□□□□□ -0.57
CHD3-208ENST00000470531 SCARA5Q6ZMJ2 495 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 PPP1R14CQ8TAE6 165 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 CCDC77Q9BR77 488 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 MAGEF1Q9HAY2 307 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 NARFQ9UHQ1 456 aa11.52□□□□□ -0.57
CHD3-208ENST00000470531 BMP3P12645 472 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 FERP16591 822 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 RCAN1P53805 252 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 SF3B3Q15393 1217 aaKnown RBP11.51□□□□□ -0.57
CHD3-208ENST00000470531 RNF10Q8N5U6 811 aaKnown RBP11.51□□□□□ -0.57
CHD3-208ENST00000470531 CPA5Q8WXQ8 436 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 NEUROG2Q9H2A3 272 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 MYO3BQ8WXR4 1341 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 MAP3K6O95382 1288 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 ECE1P42892 770 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 NPEPPSP55786 919 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 SETDB1Q15047 1291 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 GPATCH4Q5T3I0 446 aaKnown RBP11.51□□□□□ -0.57
CHD3-208ENST00000470531 HHATQ5VTY9 493 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 LLGL2Q6P1M3 1020 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 SLFN12Q8IYM2 578 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 LRRC34Q8IZ02 419 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 PLVAPQ9BX97 442 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 SPZ1Q9BXG8 430 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 POLLQ9UGP5 575 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 ALG6Q9Y672 507 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 ARHGAP23Q9P227 1491 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 SETSIPP0DME0 302 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 PRPHP41219 470 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 FNTAP49354 379 aa11.51□□□□□ -0.57
CHD3-208ENST00000470531 MXI1P50539 228 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms