RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 SUCLA2Q9P2R7 463 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-208ENST00000469802 PCDHGC5Q9Y5F6 944 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 EOMESO95936 686 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 SFPQP23246 707 aaKnown RBP eCLIP18.26■□□□□ 0.51
COL9A3-208ENST00000469802 SPOUT1Q5T280 376 aaKnown RBP18.26■□□□□ 0.51
COL9A3-208ENST00000469802 EP400NLQ6ZTU2 488 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 RHPN2Q8IUC4 686 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 GJD3Q8N144 294 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 ZNF579Q8NAF0 562 aaKnown RBP18.26■□□□□ 0.51
COL9A3-208ENST00000469802 MSLNLQ96KJ4 702 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 EPHX3Q9H6B9 360 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 IFT122Q9HBG6 1241 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 TLR9Q9NR96 1032 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 RGL1Q9NZL6 768 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 PRKAG3Q9UGI9 489 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 FAM50BQ9Y247 325 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 LZTS1Q9Y250 596 aa18.26■□□□□ 0.51
COL9A3-208ENST00000469802 BTBD18B2RXH4 712 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 WNT7AO00755 349 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 FSCN2O14926 492 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 MBTPS2O43462 519 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 GLP2RO95838 553 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 YWHABP31946 246 aaKnown RBP18.25■□□□□ 0.51
COL9A3-208ENST00000469802 RFC5P40937 340 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 PLCB3Q01970 1234 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 ZP2Q05996 745 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 SMAD4Q13485 552 aaKnown RBP18.25■□□□□ 0.51
COL9A3-208ENST00000469802 SMAD2Q15796 467 aaKnown RBP18.25■□□□□ 0.51
COL9A3-208ENST00000469802 KSR1Q8IVT5 923 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 DIS3L2Q8IYB7 885 aaKnown RBP18.25■□□□□ 0.51
COL9A3-208ENST00000469802 THNSL1Q8IYQ7 743 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 SLC7A3Q8WY07 619 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 CEP170P1Q96L14 293 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 IGFLR1Q9H665 355 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 COL4A3BPQ9Y5P4 624 aa18.25■□□□□ 0.51
COL9A3-208ENST00000469802 C19orf67A6NJJ6 358 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 COL9A1P20849 921 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 PHKA2P46019 1235 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 NRIP1P48552 1158 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 ERVFC1P60507 584 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 NCAPH2Q6IBW4 605 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 EXOC8Q8IYI6 725 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 ABI1Q8IZP0 508 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 DYDC2Q96IM9 177 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 NLRP4Q96MN2 994 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 INO80BQ9C086 356 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-208ENST00000469802 ZSWIM4Q9H7M6 989 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 C11orf16Q9NQ32 467 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 CLEC1BQ9P126 229 aa18.24■□□□□ 0.51
COL9A3-208ENST00000469802 PI4K2BG5E9Z4 385 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 GAS2O43903 313 aaKnown RBP18.23■□□□□ 0.51
COL9A3-208ENST00000469802 LYPLA2O95372 231 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 BAG4O95429 457 aaKnown RBP18.23■□□□□ 0.51
COL9A3-208ENST00000469802 EYA4O95677 639 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 PPM1AP35813 382 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 POLGP54098 1239 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-208ENST00000469802 EMC2Q15006 297 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 CLUL1Q15846 466 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 PDE12Q6L8Q7 609 aaKnown RBP18.23■□□□□ 0.51
COL9A3-208ENST00000469802 KCNT2Q6UVM3 1135 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 ADHFE1Q8IWW8 467 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 RNF169Q8NCN4 708 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 SMRP1Q8NCR6 262 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 HELQQ8TDG4 1101 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 RSPH1Q8WYR4 309 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 MRPS27Q92552 414 aaKnown RBP18.23■□□□□ 0.51
COL9A3-208ENST00000469802 ZNF558Q96NG5 402 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 AGPAT5Q9NUQ2 364 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 CD207Q9UJ71 328 aa18.23■□□□□ 0.51
COL9A3-208ENST00000469802 PIN4Q9Y237 131 aaKnown RBP18.23■□□□□ 0.51
COL9A3-208ENST00000469802 TDRD15B5MCY1 1934 aaKnown RBP18.22■□□□□ 0.51
COL9A3-208ENST00000469802 ZBTB39O15060 712 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 MARCH6O60337 910 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 NEMFO60524 1076 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 SLITRK3O94933 977 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 PBX3P40426 434 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 NDUFV1P49821 464 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 FOSBP53539 338 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 CYP4A11Q02928 519 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 COASYQ13057 564 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 CTTNQ14247 550 aaKnown RBP18.22■□□□□ 0.51
COL9A3-208ENST00000469802 CALCRLQ16602 461 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 DUSP6Q16828 381 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 TWF2Q6IBS0 349 aaKnown RBP18.22■□□□□ 0.51
COL9A3-208ENST00000469802 PRPF31Q8WWY3 499 aaKnown RBP18.22■□□□□ 0.51
COL9A3-208ENST00000469802 PSPC1Q8WXF1 523 aaKnown RBP18.22■□□□□ 0.51
COL9A3-208ENST00000469802 TMEM143Q96AN5 459 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 MTMR9Q96QG7 549 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 KIF2CQ99661 725 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 HSD17B14Q9BPX1 270 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 MRPL9Q9BYD2 267 aaKnown RBP18.22■□□□□ 0.51
COL9A3-208ENST00000469802 XPNPEP1Q9NQW7 623 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 LIMCH1Q9UPQ0 1083 aa18.22■□□□□ 0.51
COL9A3-208ENST00000469802 FSD2A1L4K1 749 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 ZNF623O75123 536 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 SSTR3P32745 418 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-208ENST00000469802 RAB27AP51159 221 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 LAMTOR4Q0VGL1 99 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 KCNC3Q14003 757 aa18.21■□□□□ 0.51
COL9A3-208ENST00000469802 TRIM29Q14134 588 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms