RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ZNF410Q86VK4 478 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 LRRC43Q8N309 656 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 MICAL1Q8TDZ2 1067 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 CHST12Q9NRB3 414 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 SUCLA2Q9P2R7 463 aaPredicted RBP18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 LZTS1Q9Y250 596 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 PCDHGC5Q9Y5F6 944 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 A0A087WZ62 844 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 FSCN2O14926 492 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 CSDE1O75534 798 aaKnown RBP18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 EYA4O95677 639 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 ALADP13716 330 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 FDPSP14324 419 aaKnown RBP18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 SFPQP23246 707 aaKnown RBP eCLIP18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 PLCB3Q01970 1234 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 CLLU1OSQ5K130 101 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 PLA2G4FQ68DD2 849 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 RBM23Q86U06 439 aaKnown RBP18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 RNF169Q8NCN4 708 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 HAS1Q92839 578 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 FDXACB1Q9BRP7 624 aaPredicted RBP18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 INO80BQ9C086 356 aaPredicted RBP18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 TLE6Q9H808 572 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 CYP26B1Q9NR63 512 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 CLEC1BQ9P126 229 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 PPME1Q9Y570 386 aa18.58■□□□□ 0.56
CCDC28B-204ENST00000469003 FSD2A1L4K1 749 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 EIF5BO60841 1220 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 GLP2RO95838 553 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 ATF7P17544 494 aaPredicted RBP18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 PPM1AP35813 382 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 KRT2P35908 639 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 ERVFC1P60507 584 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 COASYQ13057 564 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 EPHA7Q15375 998 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 ME3Q16798 604 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 EARS2Q5JPH6 523 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 KCNT2Q6UVM3 1135 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 RHPN2Q8IUC4 686 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 NECAB1Q8N987 351 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 MRPS27Q92552 414 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 GTF3C6Q969F1 213 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 ZNF558Q96NG5 402 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 POP1Q99575 1024 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 CDCA3Q99618 268 aaPredicted RBP18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 TRAIPQ9BWF2 469 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 BRMS1Q9HCU9 246 aa18.57■□□□□ 0.56
CCDC28B-204ENST00000469003 MARCH6O60337 910 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 LARGE1O95461 756 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 NPEPPSP55786 919 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 POTEDQ86YR6 584 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 C4orf19Q8IY42 314 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 EXOC8Q8IYI6 725 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 SMRP1Q8NCR6 262 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 TNFRSF25Q93038 417 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 CEP170P1Q96L14 293 aa18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 WRAP73Q9P2S5 460 aaPredicted RBP18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 PUF60Q9UHX1 559 aaKnown RBP18.56■□□□□ 0.56
CCDC28B-204ENST00000469003 FAM205CA6NFA0 338 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 PER2O15055 1255 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 DCXO43602 365 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 BAG4O95429 457 aaKnown RBP18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 PHKA2P46019 1235 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 MRE11P49959 708 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 NR5A1Q13285 461 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 DUSP6Q16828 381 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 TWF2Q6IBS0 349 aaKnown RBP18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 KSR1Q8IVT5 923 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 SLFN12Q8IYM2 578 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 HELQQ8TDG4 1101 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 SLC7A3Q8WY07 619 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 RSPH1Q8WYR4 309 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 NLRP4Q96MN2 994 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 LXNQ9BS40 222 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 MRPL9Q9BYD2 267 aaKnown RBP18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 DHX33Q9H6R0 707 aaKnown RBP18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 SPG21Q9NZD8 308 aa18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 BARX2Q9UMQ3 279 aaPredicted RBP18.55■□□□□ 0.56
CCDC28B-204ENST00000469003 ARID2Q68CP9 1835 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 SKIP12755 728 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 PBX3P40426 434 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 RFC5P40937 340 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 POLGP54098 1239 aaPredicted RBP18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 KRT17Q04695 432 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 SPIRE1Q08AE8 756 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 PLPP4Q5VZY2 271 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 NCAPH2Q6IBW4 605 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 CATSPER4Q7RTX7 472 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 ZNF579Q8NAF0 562 aaKnown RBP18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 NSUN7Q8NE18 718 aaKnown RBP18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 TCF25Q9BQ70 676 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 IFT122Q9HBG6 1241 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 NGRNQ9NPE2 291 aaKnown RBP18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 RGL1Q9NZL6 768 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 PIN4Q9Y237 131 aaKnown RBP18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 COL4A3BPQ9Y5P4 624 aa18.54■□□□□ 0.56
CCDC28B-204ENST00000469003 GAS2O43903 313 aaKnown RBP18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 YWHABP31946 246 aaKnown RBP18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 RAB27AP51159 221 aa18.53■□□□□ 0.56
CCDC28B-204ENST00000469003 NEK4P51957 841 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms