RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 NIFKQ9BYG3 293 aaKnown RBP23.19■■□□□ 1.3
COL6A1-203ENST00000466285 VAV3Q9UKW4 847 aa23.19■■□□□ 1.3
COL6A1-203ENST00000466285 DENND4AQ7Z401 1863 aa23.19■■□□□ 1.3
COL6A1-203ENST00000466285 ZDBF2Q9HCK1 2354 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 FAM205CA6NFA0 338 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 DEXIO95424 95 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 TMOD1P28289 359 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 TECP42680 631 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 ANKRD54Q6NXT1 300 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 ANO5Q75V66 913 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 ALYREFQ86V81 257 aaKnown RBP23.18■■□□□ 1.3
COL6A1-203ENST00000466285 OXER1Q8TDS5 423 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 AUTS2Q8WXX7 1259 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 PHF7Q9BWX1 381 aaPredicted RBP23.18■■□□□ 1.3
COL6A1-203ENST00000466285 BMP2KQ9NSY1 1161 aaPredicted RBP23.18■■□□□ 1.3
COL6A1-203ENST00000466285 LZTS1Q9Y250 596 aa23.18■■□□□ 1.3
COL6A1-203ENST00000466285 A0A0U1RQF3 1178 aa23.17■■□□□ 1.3
COL6A1-203ENST00000466285 ZSCAN20P17040 1043 aaPredicted RBP23.17■■□□□ 1.3
COL6A1-203ENST00000466285 NPEPPSP55786 919 aa23.17■■□□□ 1.3
COL6A1-203ENST00000466285 NHLH1Q02575 133 aa23.17■■□□□ 1.3
COL6A1-203ENST00000466285 SCRN1Q12765 414 aa23.17■■□□□ 1.3
COL6A1-203ENST00000466285 EARS2Q5JPH6 523 aaKnown RBP23.17■■□□□ 1.3
COL6A1-203ENST00000466285 TRIM22Q8IYM9 498 aa23.17■■□□□ 1.3
COL6A1-203ENST00000466285 EDAQ92838 391 aa23.17■■□□□ 1.3
COL6A1-203ENST00000466285 CYP46A1Q9Y6A2 500 aa23.17■■□□□ 1.3
COL6A1-203ENST00000466285 XKR3Q5GH77 459 aa23.16■■□□□ 1.3
COL6A1-203ENST00000466285 KANK3Q6NY19 840 aa23.16■■□□□ 1.3
COL6A1-203ENST00000466285 ABI1Q8IZP0 508 aa23.16■■□□□ 1.3
COL6A1-203ENST00000466285 ZNF274Q96GC6 653 aaPredicted RBP23.16■■□□□ 1.3
COL6A1-203ENST00000466285 PHOX2BQ99453 314 aa23.16■■□□□ 1.3
COL6A1-203ENST00000466285 VN1R3Q9BXE9 311 aa23.16■■□□□ 1.3
COL6A1-203ENST00000466285 DDX25Q9UHL0 483 aaKnown RBP23.16■■□□□ 1.3
COL6A1-203ENST00000466285 C2orf16Q68DN1 1984 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 TMEM221A6NGB7 291 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 DDX11L8A8MPP1 907 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 M0R296 226 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 HOXA2O43364 376 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 PHKA2P46019 1235 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 BCAR1P56945 870 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 NONOQ15233 471 aaKnown RBP eCLIP23.15■■□□□ 1.3
COL6A1-203ENST00000466285 LETM2Q2VYF4 491 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 IER5LQ5T953 404 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 TMEM184AQ6ZMB5 413 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 TRIM67Q6ZTA4 783 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 RHPN2Q8IUC4 686 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 PRSS33Q8NF86 280 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 RDM1Q8NG50 284 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 NLRP4Q96MN2 994 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 CDCA3Q99618 268 aaPredicted RBP23.15■■□□□ 1.3
COL6A1-203ENST00000466285 KCNMB3Q9NPA1 279 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 SPG21Q9NZD8 308 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 HCFC2Q9Y5Z7 792 aa23.15■■□□□ 1.3
COL6A1-203ENST00000466285 C2orf71A6NGG8 1288 aa23.14■■□□□ 1.29
COL6A1-203ENST00000466285 CPLX1O14810 134 aa23.14■■□□□ 1.29
COL6A1-203ENST00000466285 MAFO75444 373 aaPredicted RBP23.14■■□□□ 1.29
COL6A1-203ENST00000466285 CTDNEP1O95476 244 aa23.14■■□□□ 1.29
COL6A1-203ENST00000466285 WEE2P0C1S8 567 aa23.14■■□□□ 1.29
COL6A1-203ENST00000466285 AFF1P51825 1210 aaKnown RBP23.14■■□□□ 1.29
COL6A1-203ENST00000466285 ZXDAP98168 799 aa23.14■■□□□ 1.29
COL6A1-203ENST00000466285 PHF20Q9BVI0 1012 aa23.14■■□□□ 1.29
COL6A1-203ENST00000466285 GCOM2Q9BZD3 368 aaPredicted RBP23.14■■□□□ 1.29
COL6A1-203ENST00000466285 MINDY3Q9H8M7 445 aa23.14■■□□□ 1.29
COL6A1-203ENST00000466285 RNF216Q9NWF9 866 aaPredicted RBP23.14■■□□□ 1.29
COL6A1-203ENST00000466285 SUCLA2Q9P2R7 463 aaPredicted RBP23.14■■□□□ 1.29
COL6A1-203ENST00000466285 PIN4Q9Y237 131 aaKnown RBP23.14■■□□□ 1.29
COL6A1-203ENST00000466285 ZC3H11AO75152 810 aaKnown RBP eCLIP23.13■■□□□ 1.29
COL6A1-203ENST00000466285 PPM1AP35813 382 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 PDE12Q6L8Q7 609 aaKnown RBP23.13■■□□□ 1.29
COL6A1-203ENST00000466285 MOXD1Q6UVY6 613 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 FAM43BQ6ZT52 329 aaPredicted RBP23.13■■□□□ 1.29
COL6A1-203ENST00000466285 TMC7Q7Z402 723 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 HAS1Q92839 578 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 TM6SF1Q9BZW5 370 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 SMOC2Q9H3U7 446 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 IFT122Q9HBG6 1241 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 DNAJB4Q9UDY4 337 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 TPCN1Q9ULQ1 816 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 INPP5FQ9Y2H2 1132 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 PLXNA3P51805 1871 aa23.13■■□□□ 1.29
COL6A1-203ENST00000466285 CLASP2O75122 1294 aaKnown RBP23.12■■□□□ 1.29
COL6A1-203ENST00000466285 KRT25Q7Z3Z0 450 aa23.12■■□□□ 1.29
COL6A1-203ENST00000466285 POTEDQ86YR6 584 aa23.12■■□□□ 1.29
COL6A1-203ENST00000466285 ZBP1Q9H171 429 aa23.12■■□□□ 1.29
COL6A1-203ENST00000466285 POMKQ9H5K3 350 aa23.12■■□□□ 1.29
COL6A1-203ENST00000466285 NRDE2Q9H7Z3 1164 aa23.12■■□□□ 1.29
COL6A1-203ENST00000466285 PDRG1Q9NUG6 133 aa23.12■■□□□ 1.29
COL6A1-203ENST00000466285 TBC1D13Q9NVG8 400 aa23.12■■□□□ 1.29
COL6A1-203ENST00000466285 MYO10Q9HD67 2058 aa23.12■■□□□ 1.29
COL6A1-203ENST00000466285 WNT7AO00755 349 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 ZBTB39O15060 712 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 LARGE1O95461 756 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 EOMESO95936 686 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 PDGFBP01127 241 aaPredicted RBP23.11■■□□□ 1.29
COL6A1-203ENST00000466285 VCPP55072 806 aaKnown RBP23.11■■□□□ 1.29
COL6A1-203ENST00000466285 PSMC5P62195 406 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 PPP2R5CQ13362 524 aa23.11■■□□□ 1.29
COL6A1-203ENST00000466285 SMC1AQ14683 1233 aaKnown RBP23.11■■□□□ 1.29
COL6A1-203ENST00000466285 TWF2Q6IBS0 349 aaKnown RBP23.11■■□□□ 1.29
COL6A1-203ENST00000466285 C12orf76Q8N812 135 aaPredicted RBP23.11■■□□□ 1.29
COL6A1-203ENST00000466285 MRPL43Q8N983 215 aaKnown RBP23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms