RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 C2orf71A6NGG8 1288 aa25.47■■□□□ 1.67
USP4-208ENST00000464168 CYP3A7P24462 503 aa25.47■■□□□ 1.67
USP4-208ENST00000464168 PTPN21Q16825 1174 aa25.47■■□□□ 1.67
USP4-208ENST00000464168 XKR3Q5GH77 459 aa25.47■■□□□ 1.67
USP4-208ENST00000464168 B3GNT9Q6UX72 402 aa25.47■■□□□ 1.67
USP4-208ENST00000464168 MIER3Q7Z3K6 550 aa25.47■■□□□ 1.67
USP4-208ENST00000464168 SUGP1Q8IWZ8 645 aaKnown RBP25.47■■□□□ 1.67
USP4-208ENST00000464168 PHOX2BQ99453 314 aa25.47■■□□□ 1.67
USP4-208ENST00000464168 GCOM2Q9BZD3 368 aaPredicted RBP25.47■■□□□ 1.67
USP4-208ENST00000464168 IGKV6-21A0A0C4DH24 114 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 PSMA5P28066 241 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 BCAR1P56945 870 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 CDC42EP1Q00587 391 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 SMC1AQ14683 1233 aaKnown RBP25.46■■□□□ 1.67
USP4-208ENST00000464168 MTERF2Q49AM1 385 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 CASP10Q92851 521 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 CHST12Q9NRB3 414 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 SEPT9Q9UHD8 586 aaPredicted RBP25.46■■□□□ 1.67
USP4-208ENST00000464168 CDH22Q9UJ99 828 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 PCDHA4Q9UN74 947 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 HCFC2Q9Y5Z7 792 aa25.46■■□□□ 1.67
USP4-208ENST00000464168 NT5C1B-RDH14C9J2C7 533 aa25.45■■□□□ 1.66
USP4-208ENST00000464168 TDP2O95551 362 aa25.45■■□□□ 1.66
USP4-208ENST00000464168 ALDH7A1P49419 539 aaKnown RBP25.45■■□□□ 1.66
USP4-208ENST00000464168 SH2D3AQ9BRG2 576 aa25.45■■□□□ 1.66
USP4-208ENST00000464168 TRAIPQ9BWF2 469 aa25.45■■□□□ 1.66
USP4-208ENST00000464168 MRPL9Q9BYD2 267 aaKnown RBP25.45■■□□□ 1.66
USP4-208ENST00000464168 C22orf23Q9BZE7 217 aa25.45■■□□□ 1.66
USP4-208ENST00000464168 A0A087WZ62 844 aa25.44■■□□□ 1.66
USP4-208ENST00000464168 M0R2N6 131 aa25.44■■□□□ 1.66
USP4-208ENST00000464168 CLASP2O75122 1294 aaKnown RBP25.44■■□□□ 1.66
USP4-208ENST00000464168 SP100P23497 879 aaPredicted RBP25.44■■□□□ 1.66
USP4-208ENST00000464168 PHKA2P46019 1235 aa25.44■■□□□ 1.66
USP4-208ENST00000464168 DNM2P50570 870 aa25.44■■□□□ 1.66
USP4-208ENST00000464168 PTPN5P54829 565 aa25.44■■□□□ 1.66
USP4-208ENST00000464168 TOB2Q14106 344 aaPredicted RBP25.44■■□□□ 1.66
USP4-208ENST00000464168 TPRNQ4KMQ1 711 aa25.44■■□□□ 1.66
USP4-208ENST00000464168 PRRX2Q99811 253 aa25.44■■□□□ 1.66
USP4-208ENST00000464168 FDXACB1Q9BRP7 624 aaPredicted RBP25.44■■□□□ 1.66
USP4-208ENST00000464168 ADAM7Q9H2U9 754 aa25.44■■□□□ 1.66
USP4-208ENST00000464168 ZFHX2Q9C0A1 2572 aaPredicted RBP25.44■■□□□ 1.66
USP4-208ENST00000464168 USP34Q70CQ2 3546 aa25.43■■□□□ 1.66
USP4-208ENST00000464168 CXCL14O95715 111 aa25.43■■□□□ 1.66
USP4-208ENST00000464168 SSRP1Q08945 709 aaKnown RBP25.43■■□□□ 1.66
USP4-208ENST00000464168 TCF15Q12870 199 aa25.43■■□□□ 1.66
USP4-208ENST00000464168 TRIM22Q8IYM9 498 aa25.43■■□□□ 1.66
USP4-208ENST00000464168 ETNPPLQ8TBG4 499 aa25.43■■□□□ 1.66
USP4-208ENST00000464168 MBOAT7Q96N66 472 aa25.43■■□□□ 1.66
USP4-208ENST00000464168 SUCLA2Q9P2R7 463 aaPredicted RBP25.43■■□□□ 1.66
USP4-208ENST00000464168 DDX11L8A8MPP1 907 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 VCPP55072 806 aaKnown RBP25.42■■□□□ 1.66
USP4-208ENST00000464168 ITIH3Q06033 890 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 NPY5RQ15761 445 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 RUFY3Q7L099 469 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 TMEM173Q86WV6 379 aaPredicted RBP25.42■■□□□ 1.66
USP4-208ENST00000464168 BLIDQ8IZY5 108 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 LPPQ93052 612 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 TMEM169Q96HH4 297 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 ZSWIM6Q9HCJ5 1215 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 TSHZ2Q9NRE2 1034 aa25.42■■□□□ 1.66
USP4-208ENST00000464168 MAFO75444 373 aaPredicted RBP25.41■■□□□ 1.66
USP4-208ENST00000464168 REC8O95072 547 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 SFPQP23246 707 aaKnown RBP eCLIP25.41■■□□□ 1.66
USP4-208ENST00000464168 LONRF3Q496Y0 759 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 TWF2Q6IBS0 349 aaKnown RBP25.41■■□□□ 1.66
USP4-208ENST00000464168 CES5AQ6NT32 575 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 ANO5Q75V66 913 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 ZNF410Q86VK4 478 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 RHPN2Q8IUC4 686 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 KSR1Q8IVT5 923 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 VPS52Q8N1B4 723 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 NECTIN4Q96NY8 510 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 POMKQ9H5K3 350 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 NR2E1Q9Y466 385 aa25.41■■□□□ 1.66
USP4-208ENST00000464168 MEIS3P2A8K0S8 358 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 ZC3H11AO75152 810 aaKnown RBP eCLIP25.4■■□□□ 1.66
USP4-208ENST00000464168 DEXIO95424 95 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 AVPR2P30518 371 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 MOXD1Q6UVY6 613 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 ZBTB33Q86T24 672 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 DAGLBQ8NCG7 672 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 AUTS2Q8WXX7 1259 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 RSPH1Q8WYR4 309 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 AIFM3Q96NN9 605 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 INO80BQ9C086 356 aaPredicted RBP25.4■■□□□ 1.66
USP4-208ENST00000464168 ZBP1Q9H171 429 aa25.4■■□□□ 1.66
USP4-208ENST00000464168 PIN4Q9Y237 131 aaKnown RBP25.4■■□□□ 1.66
USP4-208ENST00000464168 ZNF623O75123 536 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 SKIP12755 728 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 CA8P35219 290 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 PSMC5P62195 406 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 BMS1Q14692 1282 aaKnown RBP25.39■■□□□ 1.66
USP4-208ENST00000464168 NOMO2Q5JPE7 1267 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 GLB1LQ6UWU2 654 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 DDX53Q86TM3 631 aaKnown RBP25.39■■□□□ 1.66
USP4-208ENST00000464168 KREMEN2Q8NCW0 462 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 ZNF274Q96GC6 653 aaPredicted RBP25.39■■□□□ 1.66
USP4-208ENST00000464168 IGSF21Q96ID5 467 aa25.39■■□□□ 1.66
USP4-208ENST00000464168 LARP6Q9BRS8 491 aaKnown RBP25.39■■□□□ 1.66
USP4-208ENST00000464168 NRDE2Q9H7Z3 1164 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms