RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 MARCH8Q5T0T0 291 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 FAM173BQ6P4H8 233 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 SV2BQ7L1I2 683 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 ZNF410Q86VK4 478 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 CEP57L1Q8IYX8 460 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 SLC17A8Q8NDX2 589 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 KIFAP3Q92845 792 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 TRIM43Q96BQ3 446 aaPredicted RBP8.59□□□□□ -1.03
USP4-207ENST00000462673 IFT74Q96LB3 600 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 DRC1Q96MC2 740 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 TIGD1Q96MW7 591 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 CELF4Q9BZC1 486 aaKnown RBP8.59□□□□□ -1.03
USP4-207ENST00000462673 FAM49AQ9H0Q0 323 aaPredicted RBP8.59□□□□□ -1.03
USP4-207ENST00000462673 CSRNP2Q9H175 543 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 DNAJC25Q9H1X3 360 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 IL23AQ9NPF7 189 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 ARGLU1Q9NWB6 273 aaPredicted RBP8.59□□□□□ -1.03
USP4-207ENST00000462673 SUCLA2Q9P2R7 463 aaPredicted RBP8.59□□□□□ -1.03
USP4-207ENST00000462673 STK17AQ9UEE5 414 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 ZMYND8Q9ULU4 1186 aaPredicted RBP8.59□□□□□ -1.03
USP4-207ENST00000462673 TELO2Q9Y4R8 837 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 KAT6AQ92794 2004 aa8.59□□□□□ -1.03
USP4-207ENST00000462673 IGKV6-21A0A0C4DH24 114 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 BAIAP3O94812 1187 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 C22orf31O95567 290 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 KRT18P05783 430 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 SLFN14P0C7P3 912 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 CYP11B2P19099 503 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 CYP2C18P33260 490 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 STAT6P42226 847 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 CCL23P55773 120 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 NLRP11P59045 1033 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 MRPS6P82932 125 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 ZNF200P98182 395 aaPredicted RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 SLC20A2Q08357 652 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 TERF2Q15554 542 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 ELF2Q15723 593 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 IL17AQ16552 155 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 UGCGQ16739 394 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 ZNF618Q5T7W0 954 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 KANK3Q6NY19 840 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 CNKSR3Q6P9H4 555 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 PADI6Q6TGC4 694 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 APBB1IPQ7Z5R6 666 aaPredicted RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 SH3RF1Q7Z6J0 888 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 RHPN2Q8IUC4 686 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 KIAA0319LQ8IZA0 1049 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 SYT2Q8N9I0 419 aaPredicted RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 PIGOQ8TEQ8 1089 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 CACTINQ8WUQ7 758 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 NLRP7Q8WX94 980 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 ZNF592Q92610 1267 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 NAT10Q9H0A0 1025 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 BHMT2Q9H2M3 363 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 DHX33Q9H6R0 707 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 MAGEF1Q9HAY2 307 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 ANO10Q9NW15 660 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 FAM53CQ9NYF3 392 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 LARSQ9P2J5 1176 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 IMPACTQ9P2X3 320 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 HOOK1Q9UJC3 728 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 FBXO2Q9UK22 296 aaPredicted RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 GINS2Q9Y248 185 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 TRPV2Q9Y5S1 764 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 MYH9P35579 1960 aaKnown RBP8.58□□□□□ -1.04
USP4-207ENST00000462673 SCN10AQ9Y5Y9 1956 aa8.58□□□□□ -1.04
USP4-207ENST00000462673 BECN2A8MW95 431 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 RPS6KA5O75582 802 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 STBD1O95210 358 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 SSBP05455 408 aaKnown RBP eCLIP8.57□□□□□ -1.04
USP4-207ENST00000462673 PLA2G4BP0C869 781 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 SKIP12755 728 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 CSF2RAP15509 400 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 SFPQP23246 707 aaKnown RBP eCLIP8.57□□□□□ -1.04
USP4-207ENST00000462673 EIF4BP23588 611 aaKnown RBP8.57□□□□□ -1.04
USP4-207ENST00000462673 CMA1P23946 247 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 CDC25AP30304 524 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 PHKA2P46019 1235 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 EFNA5P52803 228 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 NPEPPSP55786 919 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 TPM4P67936 248 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 CCZ1BP86790 482 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 CCZ1P86791 482 aaPredicted RBP8.57□□□□□ -1.04
USP4-207ENST00000462673 MDM2Q00987 491 aaPredicted RBP8.57□□□□□ -1.04
USP4-207ENST00000462673 BMS1Q14692 1282 aaKnown RBP8.57□□□□□ -1.04
USP4-207ENST00000462673 EMC2Q15006 297 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 CAMK4Q16566 473 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 FAM102BQ5T8I3 360 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 FBXO38Q6PIJ6 1188 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 POTEGQ6S5H5 508 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 TSHZ1Q6ZSZ6 1077 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 SRGAP1Q7Z6B7 1085 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 ZBTB8OSQ8IWT0 167 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 LRRC8AQ8IWT6 810 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 PHOSPHO2Q8TCD6 241 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 TRAPPC12Q8WVT3 735 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 PRPF31Q8WWY3 499 aaKnown RBP8.57□□□□□ -1.04
USP4-207ENST00000462673 SYMPKQ92797 1274 aaKnown RBP8.57□□□□□ -1.04
USP4-207ENST00000462673 C2orf40Q9H1Z8 148 aa8.57□□□□□ -1.04
USP4-207ENST00000462673 CHST12Q9NRB3 414 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms