RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 PRPF6O94906 941 aaKnown RBP12.84□□□□□ -0.35
SYNE2-207ENST00000458046 FGFR1OPO95684 399 aaKnown RBP12.84□□□□□ -0.35
SYNE2-207ENST00000458046 SLURP2P0DP57 97 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 SMARCA1P28370 1054 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 KCNMA1Q12791 1236 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 PPP4R3AQ6IN85 833 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 LRRC31Q6UY01 552 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 LRRC55Q6ZSA7 311 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 AFAP1L1Q8TED9 768 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 FGFBP2Q9BYJ0 223 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 RAB34Q9BZG1 259 aa12.84□□□□□ -0.35
SYNE2-207ENST00000458046 C6orf229H3BNL8 230 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 AGPSO00116 658 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 PLCG2P16885 1265 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 HALP42357 657 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 LRRC63Q05C16 580 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 PDIA5Q14554 519 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 WDR45BQ5MNZ6 344 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 PRR5LQ6MZQ0 368 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 NELFCDQ8IXH7 590 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 ADGRF4Q8IZF3 695 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 HVCN1Q96D96 273 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 TSG101Q99816 390 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 JMJD4Q9H9V9 463 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 POLLQ9UGP5 575 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 DDX25Q9UHL0 483 aaKnown RBP12.83□□□□□ -0.36
SYNE2-207ENST00000458046 MAST2Q6P0Q8 1798 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 MYO1CO00159 1063 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 PPP1R11O60927 126 aaPredicted RBP12.83□□□□□ -0.36
SYNE2-207ENST00000458046 SLC1A4P43007 532 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 GTF2IP78347 998 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 CCDC40Q4G0X9 1142 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 MYOCDQ8IZQ8 938 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 HAS1Q92839 578 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 MTMR8Q96EF0 704 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 MS4A14Q96JA4 679 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 RSPH14Q9UHP6 348 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 GTF2A1LQ9UNN4 478 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 CEP83Q9Y592 693 aa12.83□□□□□ -0.36
SYNE2-207ENST00000458046 THSD7BQ9C0I4 1608 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 NPHP3-ACAD11A0A0J9YXS1 232 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 ANKRD65E5RJM6 399 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 RIMBP2O15034 1052 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 IL1R1P14778 569 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 C11orf74Q86VG3 221 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 AKT1S1Q96B36 256 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 ALS2CR12Q96Q35 445 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 IWS1Q96ST2 819 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 EIF2AK1Q9BQI3 630 aaKnown RBP12.82□□□□□ -0.36
SYNE2-207ENST00000458046 PANK4Q9NVE7 773 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 VTI1BQ9UEU0 232 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 E9PMD0 336 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 H0Y3Z8 333 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 LCA5LO95447 670 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 IVLP07476 585 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 SFSWAPQ12872 951 aaKnown RBP12.82□□□□□ -0.36
SYNE2-207ENST00000458046 COASYQ13057 564 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 ORC2Q13416 577 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-207ENST00000458046 KCTD1Q719H9 257 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 DEPDC4Q8N2C3 294 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 MMGT1Q8N4V1 131 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 DNAJC19Q96DA6 116 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 IQCDQ96DY2 449 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 FAM184BQ9ULE4 1060 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 PCDHA12Q9UN75 941 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 RRP15Q9Y3B9 282 aaKnown RBP12.82□□□□□ -0.36
SYNE2-207ENST00000458046 DAGLAQ9Y4D2 1042 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 HYOU1Q9Y4L1 999 aa12.82□□□□□ -0.36
SYNE2-207ENST00000458046 MAGED1Q9Y5V3 778 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L15C9J2P7 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L10C9JJH3 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L13C9JLJ4 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L11C9JVI0 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L18D6R9N7 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L22D6RA61 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L17D6RBQ6 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L19D6RCP7 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L20D6RJB6 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 ATF4P18848 351 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 PSMA3P25788 255 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 STT3AP46977 705 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 NOVP48745 357 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 EPHB1P54762 984 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 POLR2FP61218 127 aaKnown RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 USP17L24Q0WX57 530 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 TMEM119Q4V9L6 283 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 ASPRV1Q53RT3 343 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 AGAP9Q5VTM2 703 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 HGSNATQ68CP4 663 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 CDCA2Q69YH5 1023 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 SRLQ86TD4 932 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 TIFAQ96CG3 184 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 KIAA1024Q9UPX6 916 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 PNMA6FA0A0J9YX94 578 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 GYS1P13807 737 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 FKBP3Q00688 224 aaKnown RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 EHHADHQ08426 723 aa12.81□□□□□ -0.36
SYNE2-207ENST00000458046 ASTE1Q2TB18 679 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 C15orf52Q6ZUT6 534 aaKnown RBP12.81□□□□□ -0.36
SYNE2-207ENST00000458046 MAATS1Q7Z4T9 603 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms