RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 LEXMQ3ZCV2 418 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 KLHL23Q8NBE8 558 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 SPPL3Q8TCT6 385 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 PABPC5Q96DU9 382 aaKnown RBP13.46□□□□□ -0.25
USP40-210ENST00000454354 EIF2AK1Q9BQI3 630 aaKnown RBP13.46□□□□□ -0.25
USP40-210ENST00000454354 TMEM60Q9H2L4 133 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 CWH43Q9H720 699 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 IFT122Q9HBG6 1241 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 ALG13Q9NP73 1137 aaKnown RBP13.46□□□□□ -0.25
USP40-210ENST00000454354 DACT1Q9NYF0 836 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 COL4A3BPQ9Y5P4 624 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 ZBTB39O15060 712 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 NCK2O43639 380 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 CSDE1O75534 798 aaKnown RBP13.45□□□□□ -0.26
USP40-210ENST00000454354 EOMESO95936 686 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 ATF7P17544 494 aaPredicted RBP13.45□□□□□ -0.26
USP40-210ENST00000454354 IBSPP21815 317 aaPredicted RBP13.45□□□□□ -0.26
USP40-210ENST00000454354 DNAJB1P25685 340 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 TXKP42681 527 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 EMC2Q15006 297 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 CSPP1Q1MSJ5 1256 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 NOSTRINQ8IVI9 506 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 KSR1Q8IVT5 923 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 TCP11Q8WWU5 503 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 PSPC1Q8WXF1 523 aaKnown RBP13.45□□□□□ -0.26
USP40-210ENST00000454354 RSPH1Q8WYR4 309 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 NLRP4Q96MN2 994 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 CASD1Q96PB1 797 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 XPNPEP1Q9NQW7 623 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 AAASQ9NRG9 546 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 ANKEF1Q9NU02 776 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 TYW1Q9NV66 732 aaKnown RBP13.45□□□□□ -0.26
USP40-210ENST00000454354 PCDHB12Q9Y5F1 795 aa13.45□□□□□ -0.26
USP40-210ENST00000454354 POTEMA6NI47 508 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 ST18O60284 1047 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 LAG3P18627 525 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 KCNA5P22460 613 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 PHKA2P46019 1235 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 TRAPPC10P48553 1259 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 UBE3AQ05086 875 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 LAMTOR4Q0VGL1 99 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 CTC1Q2NKJ3 1217 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 XKR9Q5GH70 373 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 CLLU1OSQ5K130 101 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 TPH2Q8IWU9 490 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 LRRC43Q8N309 656 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 FAM184AQ8NB25 1140 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 COLGALT1Q8NBJ5 622 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 PRPF31Q8WWY3 499 aaKnown RBP13.44□□□□□ -0.26
USP40-210ENST00000454354 TMEM143Q96AN5 459 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 MTRQ99707 1265 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 AGPAT5Q9NUQ2 364 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 HCSTQ9UBK5 93 aa13.44□□□□□ -0.26
USP40-210ENST00000454354 ASAP2O43150 1006 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 DGAT1O75907 488 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 OR52Z1P0C646 297 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 U2AF2P26368 475 aaKnown RBP eCLIP13.43□□□□□ -0.262e-7■□□□□ 10.6
USP40-210ENST00000454354 MCM7P33993 719 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 RAB27AP51159 221 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 HYAL1Q12794 435 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 PUS10Q3MIT2 529 aaKnown RBP13.43□□□□□ -0.26
USP40-210ENST00000454354 SPOUT1Q5T280 376 aaKnown RBP13.43□□□□□ -0.26
USP40-210ENST00000454354 LRRC55Q6ZSA7 311 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 CATSPER4Q7RTX7 472 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 SRGAP1Q7Z6B7 1085 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 FERMT3Q86UX7 667 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.43□□□□□ -0.26
USP40-210ENST00000454354 POF1BQ8WVV4 589 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 NECAB3Q96P71 396 aaPredicted RBP13.43□□□□□ -0.26
USP40-210ENST00000454354 TUFT1Q9NNX1 390 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 BMP2KQ9NSY1 1161 aaPredicted RBP13.43□□□□□ -0.26
USP40-210ENST00000454354 PIN4Q9Y237 131 aaKnown RBP13.43□□□□□ -0.26
USP40-210ENST00000454354 LZTS1Q9Y250 596 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 MYH11P35749 1972 aa13.43□□□□□ -0.26
USP40-210ENST00000454354 ZNF623O75123 536 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 FGF18O76093 207 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 SPATA31C1P0DKV0 1188 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 SKIP12755 728 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 XRCC6P12956 609 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP40-210ENST00000454354 ATP2B1P20020 1258 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 IRS1P35568 1242 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 LTBRP36941 435 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 RARRES1P49788 294 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 PLCB3Q01970 1234 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 POU5F1BQ06416 359 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 MXD4Q14582 209 aaPredicted RBP13.42□□□□□ -0.26
USP40-210ENST00000454354 PCBP1Q15365 356 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP40-210ENST00000454354 TTC38Q5R3I4 469 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 TWF2Q6IBS0 349 aaKnown RBP13.42□□□□□ -0.26
USP40-210ENST00000454354 IFNLR1Q8IU57 520 aaPredicted RBP13.42□□□□□ -0.26
USP40-210ENST00000454354 ABI1Q8IZP0 508 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 HELQQ8TDG4 1101 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 PPP2R3CQ969Q6 453 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 POLR3CQ9BUI4 534 aaPredicted RBP13.42□□□□□ -0.26
USP40-210ENST00000454354 MRPL9Q9BYD2 267 aaKnown RBP13.42□□□□□ -0.26
USP40-210ENST00000454354 MINDY3Q9H8M7 445 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 UPF2Q9HAU5 1272 aaKnown RBP13.42□□□□□ -0.26
USP40-210ENST00000454354 FAM105AQ9NUU6 356 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 CLDND1Q9NY35 253 aa13.42□□□□□ -0.26
USP40-210ENST00000454354 GRXCR2A6NFK2 248 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms