RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.78□□□□□ -1.64
VPS41-207ENST00000439468 PATE3B3GLJ2 98 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 GOLGA6L22H0YM25 854 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 GABRDO14764 452 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 ARHGAP6O43182 974 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 CR2P20023 1033 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 MRE11P49959 708 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 SCAND1P57086 179 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 SLC6A3Q01959 620 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 EIF4HQ15056 248 aaKnown RBP4.78□□□□□ -1.64
VPS41-207ENST00000439468 PCOLCEQ15113 449 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 PDCD1Q15116 288 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 AGBL4Q5VU57 503 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 KANK2Q63ZY3 851 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 TCTN3Q6NUS6 607 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 USP30Q70CQ3 517 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 OR14K1Q8NGZ2 314 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 C1QTNF3Q9BXJ4 246 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 ZMAT4Q9H898 229 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 CD248Q9HCU0 757 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 TYW1Q9NV66 732 aaKnown RBP4.78□□□□□ -1.64
VPS41-207ENST00000439468 C14orf119Q9NWQ9 140 aa4.78□□□□□ -1.64
VPS41-207ENST00000439468 UBA6A0AVT1 1052 aaPredicted RBP4.77□□□□□ -1.65
VPS41-207ENST00000439468 FOXS1O43638 330 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 ALDH1L1O75891 902 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 PARNO95453 639 aaKnown RBP4.77□□□□□ -1.65
VPS41-207ENST00000439468 S100BP04271 92 aaPredicted RBP4.77□□□□□ -1.65
VPS41-207ENST00000439468 IARSP41252 1262 aaKnown RBP4.77□□□□□ -1.65
VPS41-207ENST00000439468 FNTBP49356 437 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 ERVK-21P61565 698 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 OCRLQ01968 901 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 ALDH6A1Q02252 535 aaKnown RBP4.77□□□□□ -1.65
VPS41-207ENST00000439468 ROM1Q03395 351 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 ABCB5Q2M3G0 1257 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 ODR4Q5SWX8 454 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 PRAMEF9Q5VWM5 478 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 TMEM200BQ69YZ2 307 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 SPRED1Q7Z699 444 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 NECAB2Q7Z6G3 386 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 CBARPQ8N350 705 aaPredicted RBP4.77□□□□□ -1.65
VPS41-207ENST00000439468 DNERQ8NFT8 737 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 Q8TCH9 128 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 JDP2Q8WYK2 163 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 ZNF496Q96IT1 587 aaPredicted RBP4.77□□□□□ -1.65
VPS41-207ENST00000439468 C16orf92Q96LL3 132 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 ADOQ96SZ5 270 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 FOXB1Q99853 325 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 PUS7LQ9H0K6 701 aaKnown RBP4.77□□□□□ -1.65
VPS41-207ENST00000439468 OR10A2Q9H208 303 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 ACSS2Q9NR19 701 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 MAGEL2Q9UJ55 1249 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 TSC22D4Q9Y3Q8 395 aa4.77□□□□□ -1.65
VPS41-207ENST00000439468 GOLGA8AA7E2F4 631 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 GOLGA8BA8MQT2 603 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 MARCH6O60337 910 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 ULK1O75385 1050 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 APOL3O95236 402 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 MT-CO1P00395 513 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 CLEC2LP0C7M8 214 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 RGS3P49796 1198 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 LRRC41Q15345 812 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 TTF1Q15361 905 aaPredicted RBP4.76□□□□□ -1.65
VPS41-207ENST00000439468 TBR1Q16650 682 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 SYDE2Q5VT97 1194 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 SLFN12LQ6IEE8 588 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 RTN4RL1Q86UN2 441 aaPredicted RBP4.76□□□□□ -1.65
VPS41-207ENST00000439468 PASD1Q8IV76 773 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 FUKQ8N0W3 1084 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 TGFBRAP1Q8WUH2 860 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 FOXRED1Q96CU9 486 aaPredicted RBP4.76□□□□□ -1.65
VPS41-207ENST00000439468 AHCYL2Q96HN2 611 aaKnown RBP4.76□□□□□ -1.65
VPS41-207ENST00000439468 TUBGCP5Q96RT8 1024 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 ANO3Q9BYT9 981 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 SAE1Q9UBE0 346 aaPredicted RBP4.76□□□□□ -1.65
VPS41-207ENST00000439468 MSRAQ9UJ68 235 aa4.76□□□□□ -1.65
VPS41-207ENST00000439468 NOC2LQ9Y3T9 749 aaKnown RBP4.76□□□□□ -1.65
VPS41-207ENST00000439468 MATN3O15232 486 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 H2AFYO75367 372 aaKnown RBP4.75□□□□□ -1.65
VPS41-207ENST00000439468 PRLP01236 227 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 CYP17A1P05093 508 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 MYBL2P10244 700 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 COMTP21964 271 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 LSP1P33241 339 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 SESN3P58005 492 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 ADAM15Q13444 863 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 PRKD1Q15139 912 aaPredicted RBP4.75□□□□□ -1.65
VPS41-207ENST00000439468 PCBP2Q15366 365 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS41-207ENST00000439468 INAVAQ3KP66 663 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 CT83Q5H943 113 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 SPDYAQ5MJ70 313 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 TTC38Q5R3I4 469 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 RASSF3Q86WH2 238 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 ZNF610Q8N9Z0 462 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 CEP89Q96ST8 783 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 PLA2G12BQ9BX93 195 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 EDARQ9UNE0 448 aa4.75□□□□□ -1.65
VPS41-207ENST00000439468 C1QTNF3-AMACRE9PGA6 284 aa4.74□□□□□ -1.65
VPS41-207ENST00000439468 ELL2O00472 640 aaPredicted RBP4.74□□□□□ -1.65
VPS41-207ENST00000439468 KDM1AO60341 852 aa4.74□□□□□ -1.65
VPS41-207ENST00000439468 RAD17O75943 681 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms