RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 TMEM60Q9H2L4 133 aa20.58■□□□□ 0.89
GPC1-205ENST00000427506 CHST12Q9NRB3 414 aa20.58■□□□□ 0.89
GPC1-205ENST00000427506 TYW1Q9NV66 732 aaKnown RBP20.58■□□□□ 0.89
GPC1-205ENST00000427506 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.57■□□□□ 0.88
GPC1-205ENST00000427506 GAS2O43903 313 aaKnown RBP20.57■□□□□ 0.88
GPC1-205ENST00000427506 ITGB1P05556 798 aa20.57■□□□□ 0.88
GPC1-205ENST00000427506 SRGAP2CP0DJJ0 459 aa20.57■□□□□ 0.88
GPC1-205ENST00000427506 EMC2Q15006 297 aa20.57■□□□□ 0.88
GPC1-205ENST00000427506 ZNF174Q15697 407 aa20.57■□□□□ 0.88
GPC1-205ENST00000427506 CATSPER4Q7RTX7 472 aa20.57■□□□□ 0.88
GPC1-205ENST00000427506 MTRQ99707 1265 aa20.57■□□□□ 0.88
GPC1-205ENST00000427506 HSD17B14Q9BPX1 270 aa20.57■□□□□ 0.88
GPC1-205ENST00000427506 TMEM117Q9H0C3 514 aa20.57■□□□□ 0.88
GPC1-205ENST00000427506 PIN4Q9Y237 131 aaKnown RBP20.57■□□□□ 0.88
GPC1-205ENST00000427506 A0A0U1RQF3 1178 aa20.56■□□□□ 0.88
GPC1-205ENST00000427506 POTEMA6NI47 508 aa20.56■□□□□ 0.88
GPC1-205ENST00000427506 TWF2Q6IBS0 349 aaKnown RBP20.56■□□□□ 0.88
GPC1-205ENST00000427506 NOSTRINQ8IVI9 506 aa20.56■□□□□ 0.88
GPC1-205ENST00000427506 SPPL3Q8TCT6 385 aa20.56■□□□□ 0.88
GPC1-205ENST00000427506 POF1BQ8WVV4 589 aa20.56■□□□□ 0.88
GPC1-205ENST00000427506 NOL7Q9UMY1 257 aaKnown RBP20.56■□□□□ 0.88
GPC1-205ENST00000427506 KIF3AQ9Y496 699 aa20.56■□□□□ 0.88
GPC1-205ENST00000427506 ASAP2O43150 1006 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 LYPLA2O95372 231 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 EOMESO95936 686 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 TECP42680 631 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 LAMTOR4Q0VGL1 99 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 ORC2Q13416 577 aaPredicted RBP20.55■□□□□ 0.88
GPC1-205ENST00000427506 TTC38Q5R3I4 469 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 THNSL1Q8IYQ7 743 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 NECAB3Q96P71 396 aaPredicted RBP20.55■□□□□ 0.88
GPC1-205ENST00000427506 CASD1Q96PB1 797 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 ANKEF1Q9NU02 776 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 CLDND1Q9NY35 253 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 HCSTQ9UBK5 93 aa20.55■□□□□ 0.88
GPC1-205ENST00000427506 NCK2O43639 380 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 OR52Z1P0C646 297 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 LAG3P18627 525 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 DNAJB1P25685 340 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 CSPP1Q1MSJ5 1256 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 SRGAP1Q7Z6B7 1085 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 COLGALT1Q8NBJ5 622 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 HELQQ8TDG4 1101 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 PIGOQ8TEQ8 1089 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 PPP2R3CQ969Q6 453 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 PABPC5Q96DU9 382 aaKnown RBP20.54■□□□□ 0.88
GPC1-205ENST00000427506 IGFLR1Q9H665 355 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 IFT122Q9HBG6 1241 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 RNF19AQ9NV58 838 aa20.54■□□□□ 0.88
GPC1-205ENST00000427506 CUL9Q8IWT3 2517 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 DGAT1O75907 488 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 FGF18O76093 207 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 SKIP12755 728 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 PHKA2P46019 1235 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 CAMK1Q14012 370 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 LEXMQ3ZCV2 418 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 FERMT3Q86UX7 667 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 LRRC43Q8N309 656 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 RNF149Q8NC42 400 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 ERMNQ8TAM6 284 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 MICAL1Q8TDZ2 1067 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 CWH43Q9H720 699 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 REV3LO60673 3130 aa20.53■□□□□ 0.88
GPC1-205ENST00000427506 A0A087WWV3 80 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 H3BQ06 376 aaPredicted RBP20.52■□□□□ 0.88
GPC1-205ENST00000427506 TRAPPC10P48553 1259 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 HYAL1Q12794 435 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 MXD4Q14582 209 aaPredicted RBP20.52■□□□□ 0.88
GPC1-205ENST00000427506 LONRF3Q496Y0 759 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 CLLU1OSQ5K130 101 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 LRRC55Q6ZSA7 311 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 ZNF598Q86UK7 904 aaKnown RBP20.52■□□□□ 0.88
GPC1-205ENST00000427506 TMX3Q96JJ7 454 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 TUFT1Q9NNX1 390 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 XPNPEP1Q9NQW7 623 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 KIAA1671Q9BY89 1806 aa20.52■□□□□ 0.88
GPC1-205ENST00000427506 FNDC1Q4ZHG4 1894 aaPredicted RBP20.52■□□□□ 0.87
GPC1-205ENST00000427506 XRCC6P12956 609 aaKnown RBP eCLIP20.51■□□□□ 0.87
GPC1-205ENST00000427506 ATF7P17544 494 aaPredicted RBP20.51■□□□□ 0.87
GPC1-205ENST00000427506 IRS1P35568 1242 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 RARRES1P49788 294 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 RAB27AP51159 221 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 UBE3AQ05086 875 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 TFDP1Q14186 410 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 NBR1Q14596 966 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 MCTP1Q6DN14 999 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 PTCRAQ6ISU1 281 aaPredicted RBP20.51■□□□□ 0.87
GPC1-205ENST00000427506 CATSPER3Q86XQ3 398 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.51■□□□□ 0.87
GPC1-205ENST00000427506 ZNF558Q96NG5 402 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 TRAIPQ9BWF2 469 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 MRPL9Q9BYD2 267 aaKnown RBP20.51■□□□□ 0.87
GPC1-205ENST00000427506 AGPAT5Q9NUQ2 364 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 FAM105AQ9NUU6 356 aa20.51■□□□□ 0.87
GPC1-205ENST00000427506 TCF20Q9UGU0 1960 aaKnown RBP20.5■□□□□ 0.87
GPC1-205ENST00000427506 USO1O60763 962 aaKnown RBP20.5■□□□□ 0.87
GPC1-205ENST00000427506 MED24O75448 989 aa20.5■□□□□ 0.87
GPC1-205ENST00000427506 ERLIN2O94905 339 aa20.5■□□□□ 0.87
GPC1-205ENST00000427506 SPATA31C1P0DKV0 1188 aa20.5■□□□□ 0.87
GPC1-205ENST00000427506 U2AF2P26368 475 aaKnown RBP eCLIP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms