RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LAMTOR4Q0VGL1 99 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 TPD52L1Q16890 204 aaPredicted RBP11.13□□□□□ -0.63
CD44-207ENST00000425428 ZSCAN23Q3MJ62 389 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 NT5DC1Q5TFE4 455 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 GDF6Q6KF10 455 aaPredicted RBP11.13□□□□□ -0.63
CD44-207ENST00000425428 SFR1Q86XK3 245 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 MLKLQ8NB16 471 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 CAGE1Q8TC20 777 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 SPIRE2Q8WWL2 714 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 HVCN1Q96D96 273 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 BICD1Q96G01 975 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 PAWRQ96IZ0 340 aaKnown RBP11.13□□□□□ -0.63
CD44-207ENST00000425428 TSG101Q99816 390 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 TMEM206Q9H813 350 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 GINS2Q9Y248 185 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 UBE4BO95155 1302 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 ZBTB42B2RXF5 422 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 PQBP1O60828 265 aaKnown RBP11.13□□□□□ -0.63
CD44-207ENST00000425428 CASP1P29466 404 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 ARL2P36404 184 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 THPOP40225 353 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 ZNF131P52739 623 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 NLRP12P59046 1061 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 TPM4P67936 248 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 POU5F1BQ06416 359 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 PCBP1Q15365 356 aaKnown RBP eCLIP11.13□□□□□ -0.63
CD44-207ENST00000425428 MAPK6Q16659 721 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 CT47A1Q5JQC4 288 aaPredicted RBP11.13□□□□□ -0.63
CD44-207ENST00000425428 MYOCDQ8IZQ8 938 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 RNF149Q8NC42 400 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 DNAJB3Q8WWF6 145 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 HTATIP2Q9BUP3 242 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 SLC39A2Q9NP94 309 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 GPRC5CQ9NQ84 441 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 PDLIM7Q9NR12 457 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 TBC1D7Q9P0N9 293 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 MAN1B1Q9UKM7 699 aa11.13□□□□□ -0.63
CD44-207ENST00000425428 BICDL2A1A5D9 508 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 FRMD3A2A2Y4 597 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 RSPH10B2B2RC85 870 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 EIF3DO15371 548 aaKnown RBP eCLIP11.12□□□□□ -0.63
CD44-207ENST00000425428 ERLIN2O94905 339 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 PARNO95453 639 aaKnown RBP11.12□□□□□ -0.63
CD44-207ENST00000425428 VTNP04004 478 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 RSPH10BP0C881 870 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 SFPQP23246 707 aaKnown RBP eCLIP11.12□□□□□ -0.63
CD44-207ENST00000425428 MATR3P43243 847 aaKnown RBP eCLIP11.12□□□□□ -0.63
CD44-207ENST00000425428 NLRP11P59045 1033 aaKnown RBP11.12□□□□□ -0.63
CD44-207ENST00000425428 MARCH8Q5T0T0 291 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 C1orf53Q5VUE5 145 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 RBM43Q6ZSC3 357 aaKnown RBP11.12□□□□□ -0.63
CD44-207ENST00000425428 HS2ST1Q7LGA3 356 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 HAUS6Q7Z4H7 955 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 SRGAP1Q7Z6B7 1085 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 SERINC5Q86VE9 423 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 TNS4Q8IZW8 715 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 SPATA20Q8TB22 786 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 GOLGA5Q8TBA6 731 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 LRRC15Q8TF66 581 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 TOX2Q96NM4 488 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 ACCSQ96QU6 501 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 XPNPEP1Q9NQW7 623 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 ATP11BQ9Y2G3 1177 aa11.12□□□□□ -0.63
CD44-207ENST00000425428 CCDC85CA6NKD9 419 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 INO80B-WBP1J3KQ70 363 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 SLC16A4O15374 487 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 FGFR1OPO95684 399 aaKnown RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 GLRA2P23416 452 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 HOXC8P31273 242 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 NPTX2P47972 431 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 SARSP49591 514 aaKnown RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 MRPS6P82932 125 aaKnown RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 ISM2Q6H9L7 571 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 RPAINQ86UA6 219 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 KIAA0319LQ8IZA0 1049 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 SLC43A3Q8NBI5 491 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 ERCC4Q92889 916 aaPredicted RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 CEP89Q96ST8 783 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 NTPCRQ9BSD7 190 aaKnown RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 TRMT13Q9NUP7 481 aaKnown RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 PRMT7Q9NVM4 692 aaPredicted RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 TRPV2Q9Y5S1 764 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 DENND3A2RUS2 1198 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 BECN2A8MW95 431 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 CALUO43852 315 aaPredicted RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 KLRC4O43908 158 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 B4GALT4O60513 344 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 CDK7P50613 346 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 CRYBB1P53674 252 aaPredicted RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 SOX10P56693 466 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 ADAM17P78536 824 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 ZNF200P98182 395 aaPredicted RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 TYRO3Q06418 890 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 MORC3Q14149 939 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 FAM43BQ6ZT52 329 aaPredicted RBP11.11□□□□□ -0.63
CD44-207ENST00000425428 ZNF720Q7Z2F6 126 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 ANKRD33Q7Z3H0 272 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 USP38Q8NB14 1042 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 PPP1R13LQ8WUF5 828 aa11.11□□□□□ -0.63
CD44-207ENST00000425428 DHTKD1Q96HY7 919 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms