RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 GTF3C6Q969F1 213 aa14.59□□□□□ -0.07
VRK3-203ENST00000424804 PPP2R3CQ969Q6 453 aa14.59□□□□□ -0.07
VRK3-203ENST00000424804 POP1Q99575 1024 aaKnown RBP14.59□□□□□ -0.07
VRK3-203ENST00000424804 GJB4Q9NTQ9 266 aa14.59□□□□□ -0.07
VRK3-203ENST00000424804 RNF216Q9NWF9 866 aaPredicted RBP14.59□□□□□ -0.07
VRK3-203ENST00000424804 MYO10Q9HD67 2058 aa14.59□□□□□ -0.07
VRK3-203ENST00000424804 CTDNEP1O95476 244 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 EOMESO95936 686 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 TMOD1P28289 359 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 CSPP1Q1MSJ5 1256 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 XKR3Q5GH77 459 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 PDE12Q6L8Q7 609 aaKnown RBP14.58□□□□□ -0.08
VRK3-203ENST00000424804 MIER3Q7Z3K6 550 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 CCDC83Q8IWF9 413 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 SLC39A11Q8N1S5 342 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 ZNF579Q8NAF0 562 aaKnown RBP14.58□□□□□ -0.08
VRK3-203ENST00000424804 MICAL1Q8TDZ2 1067 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 MAP7D2Q96T17 732 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 CDCA3Q99618 268 aaPredicted RBP14.58□□□□□ -0.08
VRK3-203ENST00000424804 TRAIPQ9BWF2 469 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 WRAP73Q9P2S5 460 aaPredicted RBP14.58□□□□□ -0.08
VRK3-203ENST00000424804 VAV3Q9UKW4 847 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 STK36Q9NRP7 1315 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 ZDBF2Q9HCK1 2354 aa14.58□□□□□ -0.08
VRK3-203ENST00000424804 A0A087WZ62 844 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 MEIS3P2A8K0S8 358 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 JAK2O60674 1132 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 MAFO75444 373 aaPredicted RBP14.57□□□□□ -0.08
VRK3-203ENST00000424804 ZSCAN20P17040 1043 aaPredicted RBP14.57□□□□□ -0.08
VRK3-203ENST00000424804 TBC1D8BQ0IIM8 1120 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 MTERF2Q49AM1 385 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 EARS2Q5JPH6 523 aaKnown RBP14.57□□□□□ -0.08
VRK3-203ENST00000424804 PLPP4Q5VZY2 271 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 ANKRD54Q6NXT1 300 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 BMP8AQ7Z5Y6 402 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 KSR1Q8IVT5 923 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 WASF1Q92558 559 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 FBXL18Q96ME1 805 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 FDXACB1Q9BRP7 624 aaPredicted RBP14.57□□□□□ -0.08
VRK3-203ENST00000424804 PHF20Q9BVI0 1012 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 PHF7Q9BWX1 381 aaPredicted RBP14.57□□□□□ -0.08
VRK3-203ENST00000424804 KCNMB3Q9NPA1 279 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 TCEAL9Q9UHQ7 104 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 LIMCH1Q9UPQ0 1083 aa14.57□□□□□ -0.08
VRK3-203ENST00000424804 HOXA2O43364 376 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 B4GALT3O60512 393 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 PHKA2P46019 1235 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 ZXDAP98168 799 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 INF2Q27J81 1249 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 TMEM173Q86WV6 379 aaPredicted RBP14.56□□□□□ -0.08
VRK3-203ENST00000424804 FAM177A1Q8N128 213 aaPredicted RBP14.56□□□□□ -0.08
VRK3-203ENST00000424804 LRRC43Q8N309 656 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 NSUN7Q8NE18 718 aaKnown RBP14.56□□□□□ -0.08
VRK3-203ENST00000424804 FEZF2Q8TBJ5 459 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 HELQQ8TDG4 1101 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 HAS1Q92839 578 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 ZNF558Q96NG5 402 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 KIF2CQ99661 725 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 TCF25Q9BQ70 676 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 IFT122Q9HBG6 1241 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 CHST12Q9NRB3 414 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 SPG21Q9NZD8 308 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 SEPT9Q9UHD8 586 aaPredicted RBP14.56□□□□□ -0.08
VRK3-203ENST00000424804 CDH22Q9UJ99 828 aa14.56□□□□□ -0.08
VRK3-203ENST00000424804 CCDC194A0A1B0GVG4 234 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 C2orf71A6NGG8 1288 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 DDX11L8A8MPP1 907 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 NT5C1B-RDH14C9J2C7 533 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 RBM25P49756 843 aaKnown RBP14.55□□□□□ -0.08
VRK3-203ENST00000424804 NPEPPSP55786 919 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 PPP2R5CQ13362 524 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 TRIM29Q14134 588 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 NONOQ15233 471 aaKnown RBP eCLIP14.55□□□□□ -0.08
VRK3-203ENST00000424804 PLA2G4FQ68DD2 849 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 GALNT17Q6IS24 598 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 TRIM67Q6ZTA4 783 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 MRPL43Q8N983 215 aaKnown RBP14.55□□□□□ -0.08
VRK3-203ENST00000424804 OXER1Q8TDS5 423 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 BCL7CQ8WUZ0 217 aaPredicted RBP14.55□□□□□ -0.08
VRK3-203ENST00000424804 NLRP7Q8WX94 980 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 LPPQ93052 612 aa14.55□□□□□ -0.08
VRK3-203ENST00000424804 NGRNQ9NPE2 291 aaKnown RBP14.55□□□□□ -0.08
VRK3-203ENST00000424804 SUCLA2Q9P2R7 463 aaPredicted RBP14.55□□□□□ -0.08
VRK3-203ENST00000424804 DDX25Q9UHL0 483 aaKnown RBP14.55□□□□□ -0.08
VRK3-203ENST00000424804 ST18O60284 1047 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 CLASP2O75122 1294 aaKnown RBP14.54□□□□□ -0.08
VRK3-203ENST00000424804 ZNF623O75123 536 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 OFD1O75665 1012 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 FDPSP14324 419 aaKnown RBP14.54□□□□□ -0.08
VRK3-203ENST00000424804 TECP42680 631 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 BCAR1P56945 870 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 PSMC5P62195 406 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 NHLH1Q02575 133 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 SPIRE1Q08AE8 756 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 RABEP1Q15276 862 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 PPP4R3AQ6IN85 833 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 KRT25Q7Z3Z0 450 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 RNF169Q8NCN4 708 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 ASIC4Q96FT7 647 aa14.54□□□□□ -0.08
VRK3-203ENST00000424804 VN1R3Q9BXE9 311 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms