RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 BCRP11274 1271 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 TNFAIP3P21580 790 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 CETN1Q12798 172 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 ALCAMQ13740 583 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 QRICH1Q2TAL8 776 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 CYFIP1Q7L576 1253 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 DDX42Q86XP3 938 aaKnown RBP eCLIP11.92□□□□□ -0.5
LIMS1-207ENST00000422797 JAMLQ86YT9 394 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 GPIHBP1Q8IV16 184 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 SLC9A9Q8IVB4 645 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 OR2W6PQ8NHA6 318 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 SLC35G2Q8TBE7 412 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 TMEM174Q8WUU8 243 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 AMNQ9BXJ7 453 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 MOV10L1Q9BXT6 1211 aaKnown RBP11.92□□□□□ -0.5
LIMS1-207ENST00000422797 OSBPL7Q9BZF2 842 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 MTUS1Q9ULD2 1270 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 ODF2LQ9ULJ1 636 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 LRRC37AA6NMS7 1700 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 KCNQ2O43526 872 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 MGRN1O60291 552 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 CTNND1O60716 968 aaKnown RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 MTA2O94776 668 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 MMEP08473 750 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 SPATA31C1P0DKV0 1188 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 ITGA4P13612 1032 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 HOXD13P35453 343 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 FMO5P49326 533 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 KLRC3Q07444 240 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 NFIXQ14938 502 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 SEL1L2Q5TEA6 688 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 MFSD5Q6N075 450 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 TRMT10CQ7L0Y3 403 aaKnown RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 LNX1Q8TBB1 728 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 JPH2Q9BR39 696 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 PLVAPQ9BX97 442 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 COA1Q9GZY4 146 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 DPH5Q9H2P9 285 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 ATP6V0A4Q9HBG4 840 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 HOMER3Q9NSC5 361 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 APEX2Q9UBZ4 518 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 CNOT8Q9UFF9 292 aaKnown RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 DNAJC12Q9UKB3 198 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 ATP8A1Q9Y2Q0 1164 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 KIAA0391O15091 583 aaKnown RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 TMOD1P28289 359 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 MAN1A1P33908 653 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 SHMT1P34896 483 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 RFC4P35249 363 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 CASP5P51878 434 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 PABPC4Q13310 644 aaKnown RBP eCLIP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 DRAP1Q14919 205 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 HHIPL2Q6UWX4 724 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 SYDE1Q6ZW31 735 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 PIGWQ7Z7B1 504 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 MAIP1Q8WWC4 291 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 ARHGEF1Q92888 912 aaKnown RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 ZNF317Q96PQ6 595 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 INTS2Q9H0H0 1204 aaKnown RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 WNT8AQ9H1J5 351 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 EHMT1Q9H9B1 1298 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 KANSL2Q9H9L4 492 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 PARVGQ9HBI0 331 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 INTS9Q9NV88 658 aaKnown RBP11.91□□□□□ -0.5
LIMS1-207ENST00000422797 DMAC2Q9NW81 257 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 SLC12A4Q9UP95 1085 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 TRPC6Q9Y210 931 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 PCDHB13Q9Y5F0 798 aa11.91□□□□□ -0.5
LIMS1-207ENST00000422797 PASKQ96RG2 1323 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 PPIP5K2O43314 1243 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 GABBR2O75899 941 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 ALAS1P13196 640 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 RARGP13631 454 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 VCAM1P19320 739 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 CTNNA2P26232 953 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 HOXA10P31260 410 aaPredicted RBP11.9□□□□□ -0.5
LIMS1-207ENST00000422797 ELF1P32519 619 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 PDE6CP51160 858 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 ZNF131P52739 623 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 SNRPFP62306 86 aaKnown RBP11.9□□□□□ -0.5
LIMS1-207ENST00000422797 MYL7Q01449 175 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 MKRN3Q13064 507 aaKnown RBP11.9□□□□□ -0.5
LIMS1-207ENST00000422797 CYP1B1Q16678 543 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 QPCTQ16769 361 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 PRR16Q569H4 304 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 TRAPPC3LQ5T215 181 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 CEP128Q6ZU80 1094 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 GLYCTKQ8IVS8 523 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 C12orf50Q8NA57 414 aaPredicted RBP11.9□□□□□ -0.5
LIMS1-207ENST00000422797 ATXN2LQ8WWM7 1075 aaKnown RBP11.9□□□□□ -0.5
LIMS1-207ENST00000422797 CRAMP1Q96RY5 1269 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 CCNL1Q9UK58 526 aaPredicted RBP11.9□□□□□ -0.5
LIMS1-207ENST00000422797 VAV3Q9UKW4 847 aa11.9□□□□□ -0.5
LIMS1-207ENST00000422797 ZNF536O15090 1300 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L15C9J2P7 530 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L13C9JLJ4 530 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L11C9JVI0 530 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L18D6R9N7 530 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L22D6RA61 530 aa11.89□□□□□ -0.51
LIMS1-207ENST00000422797 USP17L17D6RBQ6 530 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms