RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ATOH1Q92858 354 aaPredicted RBP9.14□□□□□ -0.95
VIM-202ENST00000421459 SLC5A5Q92911 643 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 RIPOR3Q96MK2 946 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 FDXACB1Q9BRP7 624 aaPredicted RBP9.14□□□□□ -0.95
VIM-202ENST00000421459 VN1R3Q9BXE9 311 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 ADAM7Q9H2U9 754 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 RNF216Q9NWF9 866 aaPredicted RBP9.14□□□□□ -0.95
VIM-202ENST00000421459 DNAJB4Q9UDY4 337 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 LIMD1Q9UGP4 676 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 SEPT9Q9UHD8 586 aaPredicted RBP9.14□□□□□ -0.95
VIM-202ENST00000421459 CEP131Q9UPN4 1083 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 VPS13AQ96RL7 3174 aa9.14□□□□□ -0.95
VIM-202ENST00000421459 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.13□□□□□ -0.95
VIM-202ENST00000421459 DDX11L8A8MPP1 907 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 HOXA2O43364 376 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 GAS7O60861 476 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 CDC45O75419 566 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 PSMD10O75832 226 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 MYBP10242 640 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 HOXB8P17481 243 aaPredicted RBP9.13□□□□□ -0.95
VIM-202ENST00000421459 RPS6KB1P23443 525 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 GNA11P29992 359 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 PDIA3P30101 505 aaKnown RBP9.13□□□□□ -0.95
VIM-202ENST00000421459 PPM1AP35813 382 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 PHKA2P46019 1235 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 ALDH7A1P49419 539 aaKnown RBP9.13□□□□□ -0.95
VIM-202ENST00000421459 KRT32Q14532 448 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 PLA2G4FQ68DD2 849 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 TMC5Q6UXY8 1006 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 MIER3Q7Z3K6 550 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 ZNF280BQ86YH2 543 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 TEX2Q8IWB9 1127 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 TMEM105Q8N8V8 129 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 CASP10Q92851 521 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 KCNB2Q92953 911 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 FAM167AQ96KS9 214 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 AIFM3Q96NN9 605 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 TEKT3Q9BXF9 490 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 GBP3Q9H0R5 595 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 ZBP1Q9H171 429 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 NRDE2Q9H7Z3 1164 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 SUCLA2Q9P2R7 463 aaPredicted RBP9.13□□□□□ -0.95
VIM-202ENST00000421459 INPP5FQ9Y2H2 1132 aa9.13□□□□□ -0.95
VIM-202ENST00000421459 CCDC196A0A1B0GTZ2 297 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 EML1O00423 815 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 GFRA3O60609 400 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 OFD1O75665 1012 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 DDHD2O94830 711 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 EOMESO95936 686 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 SSBP05455 408 aaKnown RBP eCLIP9.12□□□□□ -0.95
VIM-202ENST00000421459 GALTP07902 379 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 HMGB1P09429 215 aaKnown RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 SRGAP2BP0DMP2 458 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 SLC11A1P49279 550 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 RCAN1P53805 252 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 NPEPPSP55786 919 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 NLRP5P59047 1200 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 AKAP17AQ02040 695 aaKnown RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 TPRNQ4KMQ1 711 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 TWF2Q6IBS0 349 aaKnown RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 BLOC1S2Q6QNY1 142 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 B3GNT9Q6UX72 402 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 RHPN2Q8IUC4 686 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 CCDC12Q8WUD4 166 aaPredicted RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 SLC22A17Q8WUG5 538 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 TMEM169Q96HH4 297 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 IGSF21Q96ID5 467 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 NLRP4Q96MN2 994 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 RIT2Q99578 217 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 NIFKQ9BYG3 293 aaKnown RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 GCOM2Q9BZD3 368 aaPredicted RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 BMP2KQ9NSY1 1161 aaPredicted RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 TBC1D13Q9NVG8 400 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 WRAP73Q9P2S5 460 aaPredicted RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 PIN4Q9Y237 131 aaKnown RBP9.12□□□□□ -0.95
VIM-202ENST00000421459 NR2E1Q9Y466 385 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 ZNF318Q5VUA4 2279 aa9.12□□□□□ -0.95
VIM-202ENST00000421459 IGKV6-21A0A0C4DH24 114 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 PI15O43692 258 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 SLC37A4O43826 429 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 IFNAR1P17181 557 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 SFNP31947 248 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 HSPA4P34932 840 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 USP11P51784 963 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 JAK3P52333 1124 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 ITIH3Q06033 890 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 STK3Q13188 491 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 TOB2Q14106 344 aaPredicted RBP9.11□□□□□ -0.95
VIM-202ENST00000421459 NPY5RQ15761 445 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 Q4G0T1 1027 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 XKR3Q5GH77 459 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 NOMO2Q5JPE7 1267 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 MCTP2Q6DN12 878 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 CES5AQ6NT32 575 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 AGMOQ6ZNB7 445 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 ANO5Q75V66 913 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 ASCL5Q7RTU5 278 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 TAS1R1Q7RTX1 841 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 ETNPPLQ8TBG4 499 aa9.11□□□□□ -0.95
VIM-202ENST00000421459 BICD2Q8TD16 824 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms