RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CPSF3Q9UKF6 684 aaKnown RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 AGO2Q9UKV8 859 aaKnown RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 CCDC151A5D8V7 595 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 PLS3P13797 630 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 EIF3BP55884 814 aaKnown RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 SPTLC3Q9NUV7 552 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 ZBTB12Q9Y330 459 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 GOLGA8QA0A0J9YX86 632 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 GOLGA8OA6NCC3 632 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 GOLGA8NF8WBI6 632 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 CAV1Q03135 178 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 DPYDQ12882 1025 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 C17orf53Q8N3J3 647 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 HBP1O60381 514 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 TJP3O95049 919 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 OAZ1P54368 228 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 COG7P83436 770 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 TWF2Q6IBS0 349 aaKnown RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 ADAM22Q9P0K1 906 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 PYCARDQ9ULZ3 195 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 HPS5Q9UPZ3 1129 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 ATP1A3P13637 1013 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 GEN1Q17RS7 908 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 IER5Q5VY09 327 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 CTAGE3PQ8IX95 158 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-205ENST00000414879 FOXP2O15409 715 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 NPM3O75607 178 aaKnown RBP12.85□□□□□ -0.35
PTPRF-205ENST00000414879 IL18RAPO95256 599 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 CCDC62Q6P9F0 684 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 OR6J1Q8NGC5 347 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 PPP4R1Q8TF05 950 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 PGBD4Q96DM1 585 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 NRBP1Q9UHY1 535 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 STAP1Q9ULZ2 295 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 GGPS1O95749 300 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 STX2P32856 288 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 OR6B3Q8NGW1 331 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 INTS2Q9H0H0 1204 aaKnown RBP12.85□□□□□ -0.35
PTPRF-205ENST00000414879 MID2Q9UJV3 735 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 CAPN11Q9UMQ6 739 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.85□□□□□ -0.357e-6■■■■□ 23.8
PTPRF-205ENST00000414879 FDPSP14324 419 aaKnown RBP12.85□□□□□ -0.35
PTPRF-205ENST00000414879 SLC26A2P50443 739 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 SEC23AQ15436 765 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 RHPN2Q8IUC4 686 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 ANKRD13CQ8N6S4 541 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 RUBCNQ92622 972 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 FAM213AQ9BRX8 229 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 ADAMTS1Q9UHI8 967 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 SLC8A2Q9UPR5 921 aa12.85□□□□□ -0.35
PTPRF-205ENST00000414879 TCRBV5S4A2TA0A5A2 114 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 GRID2IPA4D2P6 1211 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 GOLGA8IPA6NC78 632 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 GOLGA8JA6NMD2 632 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 BACE1P56817 501 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 NFX1Q12986 1120 aaKnown RBP12.84□□□□□ -0.35
PTPRF-205ENST00000414879 SPDYE2Q495Y8 402 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 METTL16Q86W50 562 aaKnown RBP12.84□□□□□ -0.35
PTPRF-205ENST00000414879 KCTD6Q8NC69 237 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 EEF2KMTQ96G04 330 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 CFAP57Q96MR6 1250 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 RBAKQ9NYW8 714 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-205ENST00000414879 CXCL11O14625 94 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 MKRN3Q13064 507 aaKnown RBP12.84□□□□□ -0.35
PTPRF-205ENST00000414879 PCGF5Q86SE9 256 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.84□□□□□ -0.35
PTPRF-205ENST00000414879 TNIP3Q96KP6 325 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 PRMT7Q9NVM4 692 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-205ENST00000414879 WDR35Q9P2L0 1181 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 SSU72P8A0A1W2PR75 194 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 SFI1A8K8P3 1242 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 GOLGA8SH3BPF8 625 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 TRAPPC3O43617 180 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 ABL1P00519 1130 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 KRT7P08729 469 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 GUCY2DQ02846 1103 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 DNAJC21Q5F1R6 531 aaKnown RBP12.84□□□□□ -0.35
PTPRF-205ENST00000414879 CEP85LQ5SZL2 805 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 TMEM39BQ9GZU3 492 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 RIOX1Q9H6W3 641 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 BCL2L12Q9HB09 334 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 ERAP1Q9NZ08 941 aa12.84□□□□□ -0.35
PTPRF-205ENST00000414879 SOWAHDA6NJG2 315 aa12.83□□□□□ -0.35
PTPRF-205ENST00000414879 GOLGA8FQ08AF8 430 aa12.83□□□□□ -0.35
PTPRF-205ENST00000414879 GOLGA8DPQ0D2H9 430 aa12.83□□□□□ -0.35
PTPRF-205ENST00000414879 PPFIBP2Q8ND30 876 aa12.83□□□□□ -0.35
PTPRF-205ENST00000414879 DDX56Q9NY93 547 aaKnown RBP12.83□□□□□ -0.35
PTPRF-205ENST00000414879 PHRF1Q9P1Y6 1649 aaKnown RBP12.83□□□□□ -0.35
PTPRF-205ENST00000414879 SGK1O00141 431 aa12.83□□□□□ -0.36
PTPRF-205ENST00000414879 PRKCBP05771 671 aa12.83□□□□□ -0.36
PTPRF-205ENST00000414879 SREBF1P36956 1147 aa12.83□□□□□ -0.36
PTPRF-205ENST00000414879 ALS2CLQ60I27 953 aa12.83□□□□□ -0.36
PTPRF-205ENST00000414879 EMBQ6PCB8 327 aa12.83□□□□□ -0.36
PTPRF-205ENST00000414879 ZNF526Q8TF50 670 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-205ENST00000414879 IGSF9BQ9UPX0 1349 aa12.83□□□□□ -0.36
PTPRF-205ENST00000414879 MED1Q15648 1581 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-205ENST00000414879 CCL15-CCL14A0A0B4J2E2 113 aa12.83□□□□□ -0.36
PTPRF-205ENST00000414879 GCLMP48507 274 aa12.83□□□□□ -0.36
PTPRF-205ENST00000414879 CCL15Q16663 113 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms