RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 FAM189BP81408 668 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 POU5F1BQ06416 359 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 TFDP1Q14186 410 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 HYIQ5T013 277 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 FAM173BQ6P4H8 233 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 PADI6Q6TGC4 694 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 KCTD17Q8N5Z5 321 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 ZNF689Q96CS4 500 aaPredicted RBP23.07■■□□□ 1.28
VSX1-204ENST00000409958 TGS1Q96RS0 853 aaKnown RBP23.07■■□□□ 1.28
VSX1-204ENST00000409958 GAS2L1Q99501 681 aaPredicted RBP23.07■■□□□ 1.28
VSX1-204ENST00000409958 BHMT2Q9H2M3 363 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 CHST12Q9NRB3 414 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 LRFN2Q9ULH4 789 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 DNM3Q9UQ16 869 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 CLIC4Q9Y696 253 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 COL6A3P12111 3177 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 FOSL2P15408 326 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 PHKA2P46019 1235 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 PTPAQ15257 358 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 ASAP3Q8TDY4 903 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 ARNTL2Q8WYA1 636 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 POLR3FQ9H1D9 316 aaPredicted RBP23.06■■□□□ 1.28
VSX1-204ENST00000409958 ELAC1Q9H777 363 aaKnown RBP23.06■■□□□ 1.28
VSX1-204ENST00000409958 CERS4Q9HA82 394 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 DACT1Q9NYF0 836 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 PCDHB7Q9Y5E2 793 aa23.06■■□□□ 1.28
VSX1-204ENST00000409958 ADGRA3Q8IWK6 1321 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 SLC26A4O43511 780 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 EYA4O95677 639 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 GLRA2P23416 452 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 LONP1P36776 959 aaKnown RBP23.05■■□□□ 1.28
VSX1-204ENST00000409958 PTENP60484 403 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 CAPSQ13938 189 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 CATSPER4Q7RTX7 472 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 SPRED2Q7Z698 418 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 IFNLR1Q8IU57 520 aaPredicted RBP23.05■■□□□ 1.28
VSX1-204ENST00000409958 NT5C3AQ9H0P0 336 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 TMEM161AQ9NX61 479 aa23.05■■□□□ 1.28
VSX1-204ENST00000409958 PCBP1Q15365 356 aaKnown RBP eCLIP23.04■■□□□ 1.28
VSX1-204ENST00000409958 MAEAQ7L5Y9 396 aa23.04■■□□□ 1.28
VSX1-204ENST00000409958 FIBCD1Q8N539 461 aa23.04■■□□□ 1.28
VSX1-204ENST00000409958 SAMD11Q96NU1 681 aa23.04■■□□□ 1.28
VSX1-204ENST00000409958 NFKBIZQ9BYH8 718 aa23.04■■□□□ 1.28
VSX1-204ENST00000409958 MINDY3Q9H8M7 445 aa23.04■■□□□ 1.28
VSX1-204ENST00000409958 GPRC5CQ9NQ84 441 aa23.04■■□□□ 1.28
VSX1-204ENST00000409958 MORC2Q9Y6X9 1032 aaPredicted RBP23.04■■□□□ 1.28
VSX1-204ENST00000409958 EPOPA6NHQ4 379 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 E9PMD0 336 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 ADGRE1Q14246 886 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 ZRSR1Q15695 479 aaKnown RBP23.03■■□□□ 1.28
VSX1-204ENST00000409958 FAM102BQ5T8I3 360 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 KCNK18Q7Z418 384 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 CABP7Q86V35 215 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 CMTR2Q8IYT2 770 aaKnown RBP23.03■■□□□ 1.28
VSX1-204ENST00000409958 SPRYD3Q8NCJ5 442 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 CDK5RAP3Q96JB5 506 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 PNMA5Q96PV4 448 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 TRAIPQ9BWF2 469 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 AGPAT5Q9NUQ2 364 aa23.03■■□□□ 1.28
VSX1-204ENST00000409958 PIN4Q9Y237 131 aaKnown RBP23.03■■□□□ 1.28
VSX1-204ENST00000409958 A0A0U1RQF3 1178 aa23.02■■□□□ 1.28
VSX1-204ENST00000409958 IBSPP21815 317 aaPredicted RBP23.02■■□□□ 1.28
VSX1-204ENST00000409958 UBA7P41226 1012 aa23.02■■□□□ 1.28
VSX1-204ENST00000409958 GRIN1Q05586 938 aa23.02■■□□□ 1.28
VSX1-204ENST00000409958 GRB10Q13322 594 aa23.02■■□□□ 1.28
VSX1-204ENST00000409958 BTG3Q14201 252 aaPredicted RBP23.02■■□□□ 1.28
VSX1-204ENST00000409958 ECHDC2Q86YB7 292 aa23.02■■□□□ 1.28
VSX1-204ENST00000409958 USP28Q96RU2 1077 aa23.02■■□□□ 1.28
VSX1-204ENST00000409958 C17orf80Q9BSJ5 609 aa23.02■■□□□ 1.28
VSX1-204ENST00000409958 RFXAPO00287 272 aa23.01■■□□□ 1.27
VSX1-204ENST00000409958 ZSCAN22P10073 491 aaPredicted RBP23.01■■□□□ 1.27
VSX1-204ENST00000409958 TMEM119Q4V9L6 283 aa23.01■■□□□ 1.27
VSX1-204ENST00000409958 TWF2Q6IBS0 349 aaKnown RBP23.01■■□□□ 1.27
VSX1-204ENST00000409958 MTUS1Q9ULD2 1270 aa23.01■■□□□ 1.27
VSX1-204ENST00000409958 SRPRBQ9Y5M8 271 aaKnown RBP23.01■■□□□ 1.27
VSX1-204ENST00000409958 EYSQ5T1H1 3165 aa23.01■■□□□ 1.27
VSX1-204ENST00000409958 EOMESO95936 686 aa23■■□□□ 1.27
VSX1-204ENST00000409958 MARCKSP29966 332 aaPredicted RBP23■■□□□ 1.27
VSX1-204ENST00000409958 CEBPZQ03701 1054 aaKnown RBP23■■□□□ 1.27
VSX1-204ENST00000409958 MBTD1Q05BQ5 628 aa23■■□□□ 1.27
VSX1-204ENST00000409958 SLC39A14Q15043 492 aa23■■□□□ 1.27
VSX1-204ENST00000409958 MAFAQ8NHW3 353 aaPredicted RBP23■■□□□ 1.27
VSX1-204ENST00000409958 KIFAP3Q92845 792 aa23■■□□□ 1.27
VSX1-204ENST00000409958 CLP1Q92989 425 aaKnown RBP23■■□□□ 1.27
VSX1-204ENST00000409958 CALML4Q96GE6 196 aa23■■□□□ 1.27
VSX1-204ENST00000409958 FBXO2Q9UK22 296 aaPredicted RBP23■■□□□ 1.27
VSX1-204ENST00000409958 RWDD3Q9Y3V2 267 aa23■■□□□ 1.27
VSX1-204ENST00000409958 LRRIQ4A6NIV6 560 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 INO80B-WBP1J3KQ70 363 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 HOXA2O43364 376 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 ERLIN2O94905 339 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 F13A1P00488 732 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 LINC00271P0C7V0 271 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 SKIP12755 728 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 POU3F3P20264 500 aaPredicted RBP22.99■■□□□ 1.27
VSX1-204ENST00000409958 IGFBP4P22692 258 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 NASPP49321 788 aaPredicted RBP22.99■■□□□ 1.27
VSX1-204ENST00000409958 PPP2R5AQ15172 486 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 EPC2Q52LR7 807 aa22.99■■□□□ 1.27
VSX1-204ENST00000409958 RINT1Q6NUQ1 792 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms