RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ALKBH5Q6P6C2 394 aaKnown RBP9.83□□□□□ -0.84
LIG4-202ENST00000405925 METTL7BQ6UX53 244 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 CDR2LQ86X02 465 aaPredicted RBP9.83□□□□□ -0.84
LIG4-202ENST00000405925 TEX2Q8IWB9 1127 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 CCDC26Q8TAB7 109 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 PPP1R13BQ96KQ4 1090 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 PANX2Q96RD6 677 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 TSKSQ9UJT2 592 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 SPDYE5A6NIY4 337 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 POLR3GO15318 223 aaPredicted RBP9.83□□□□□ -0.84
LIG4-202ENST00000405925 USP2O75604 605 aaPredicted RBP9.83□□□□□ -0.84
LIG4-202ENST00000405925 CLCN3P51790 818 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 CFAP221Q4G0U5 840 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 TREML2Q5T2D2 321 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 KIAA1841Q6NSI8 718 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 ZNF365Q70YC5 407 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 PHLDB2Q86SQ0 1253 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 SLC35F6Q8N357 371 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 KCTD17Q8N5Z5 321 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 OR6B3Q8NGW1 331 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 ERO1AQ96HE7 468 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 ENC1O14682 589 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 TRPA1O75762 1119 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 GPC3P51654 580 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 DSTYKQ6XUX3 929 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 ARMCX2Q7L311 632 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 TRIM50Q86XT4 487 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 PLEKHA4Q9H4M7 779 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 CYP39A1Q9NYL5 469 aa9.83□□□□□ -0.84
LIG4-202ENST00000405925 SYNJ2BP-COX16A0A087WUM0 186 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 EML1O00423 815 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 ATP2A1O14983 1001 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 LPXNO60711 386 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 RNF8O76064 485 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 NLRP11P59045 1033 aaKnown RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 IER5Q5VY09 327 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 OTOP1Q7RTM1 612 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 FRMD5Q7Z6J6 570 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 RIOX2Q8IUF8 465 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 CCDC170Q8IYT3 715 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 GMLQ99445 158 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 MIS12Q9H081 205 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 ABHD10Q9NUJ1 306 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 COX16Q9P0S2 106 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 CEP72Q9P209 647 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 NWD2Q9ULI1 1742 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 ALDH1A1P00352 501 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 ARPP19P56211 112 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 LLGL1Q15334 1064 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 EDRF1Q3B7T1 1238 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 RGMBQ6NW40 437 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 LEKR1Q6ZMV7 388 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 ADAT2Q7Z6V5 191 aaKnown RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 METTL23Q86XA0 190 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 IL31RAQ8NI17 732 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 HYOU1Q9Y4L1 999 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 IGSF9BQ9UPX0 1349 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 TMEM150BA6NC51 233 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 PPP1R3GB7ZBB8 358 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 PPP1R11O60927 126 aaPredicted RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 TGFB3P10600 412 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 TUBB4BP68371 445 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 TUBB2AQ13885 445 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 TMEM270Q6UE05 265 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 VSIG10LQ86VR7 867 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 FBXL13Q8NEE6 735 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 HEXIM2Q96MH2 286 aaKnown RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 GLT1D1Q96MS3 346 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 TUBB2BQ9BVA1 445 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 A0A087X0B3 334 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 ZNF500O60304 480 aaPredicted RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 PSMC4P43686 418 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 CPT1AP50416 773 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 DRAP1Q14919 205 aaPredicted RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 SNRNP35Q16560 246 aaKnown RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 DUOXA2Q1HG44 320 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 CCDC117Q8IWD4 279 aaPredicted RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 KIF12Q96FN5 646 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 PNMA5Q96PV4 448 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 INTS2Q9H0H0 1204 aaKnown RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 MTRF1LQ9UGC7 380 aaKnown RBP9.82□□□□□ -0.84
LIG4-202ENST00000405925 ASIC3Q9UHC3 531 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 IKBKGQ9Y6K9 419 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 LTBP3Q9NS15 1303 aa9.82□□□□□ -0.84
LIG4-202ENST00000405925 KBTBD13C9JR72 458 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 WNT7AO00755 349 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 HSF2BPO75031 334 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 MYZAPP0CAP1 466 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 CD44P16070 742 aaKnown RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 RARRES1P49788 294 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 FKBP1BP68106 108 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 GIT2Q14161 759 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 NAA35Q5VZE5 725 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.81□□□□□ -0.84
LIG4-202ENST00000405925 C4orf19Q8IY42 314 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 CCDC105Q8IYK2 499 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 SMC1BQ8NDV3 1235 aa9.81□□□□□ -0.84
LIG4-202ENST00000405925 BEST2Q8NFU1 509 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms