RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 FGFR4P22455 802 aa32.06■■■□□ 2.72
HMGB1-205ENST00000399494 TECP42680 631 aa32.06■■■□□ 2.72
HMGB1-205ENST00000399494 KRT17Q04695 432 aa32.06■■■□□ 2.72
HMGB1-205ENST00000399494 SYCE2Q6PIF2 218 aa32.06■■■□□ 2.72
HMGB1-205ENST00000399494 ZNF598Q86UK7 904 aaKnown RBP32.06■■■□□ 2.72
HMGB1-205ENST00000399494 SPG21Q9NZD8 308 aa32.06■■■□□ 2.72
HMGB1-205ENST00000399494 STK36Q9NRP7 1315 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 CHMP2AO43633 222 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 EOMESO95936 686 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 SRGAP2BP0DMP2 458 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 PPM1AP35813 382 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 JAK3P52333 1124 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 NLRP5P59047 1200 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 LRCH2Q5VUJ6 765 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 RNF169Q8NCN4 708 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 TEKT3Q9BXF9 490 aa32.05■■■□□ 2.72
HMGB1-205ENST00000399494 PSMD10O75832 226 aa32.04■■■□□ 2.72
HMGB1-205ENST00000399494 TBC1D8BQ0IIM8 1120 aa32.04■■■□□ 2.72
HMGB1-205ENST00000399494 LLGL2Q6P1M3 1020 aa32.04■■■□□ 2.72
HMGB1-205ENST00000399494 TMC7Q7Z402 723 aa32.04■■■□□ 2.72
HMGB1-205ENST00000399494 TBCKQ8TEA7 893 aa32.04■■■□□ 2.72
HMGB1-205ENST00000399494 NIFKQ9BYG3 293 aaKnown RBP32.04■■■□□ 2.72
HMGB1-205ENST00000399494 CSDE1O75534 798 aaKnown RBP32.03■■■□□ 2.72
HMGB1-205ENST00000399494 STBD1O95210 358 aa32.03■■■□□ 2.72
HMGB1-205ENST00000399494 DRP2Q13474 957 aa32.03■■■□□ 2.72
HMGB1-205ENST00000399494 Q4G0T1 1027 aa32.03■■■□□ 2.72
HMGB1-205ENST00000399494 TBC1D32Q96NH3 1257 aa32.03■■■□□ 2.72
HMGB1-205ENST00000399494 CEP89Q96ST8 783 aa32.03■■■□□ 2.72
HMGB1-205ENST00000399494 BACH2Q9BYV9 841 aa32.03■■■□□ 2.72
HMGB1-205ENST00000399494 ST18O60284 1047 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 HOXB8P17481 243 aaPredicted RBP32.02■■■□□ 2.72
HMGB1-205ENST00000399494 IER5LQ5T953 404 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 B3GNT9Q6UX72 402 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 SLC39A11Q8N1S5 342 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 MRPL43Q8N983 215 aaKnown RBP32.02■■■□□ 2.72
HMGB1-205ENST00000399494 RDM1Q8NG50 284 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 HELQQ8TDG4 1101 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 NLRP7Q8WX94 980 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 SCLT1Q96NL6 688 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 AIFM3Q96NN9 605 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 APOL5Q9BWW9 433 aa32.02■■■□□ 2.72
HMGB1-205ENST00000399494 CYP3A7-CYP3A51PA0A087WV96 503 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 CTDNEP1O95476 244 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 XBP1P17861 261 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 CYP3A7P24462 503 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 CDC42EP1Q00587 391 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 SIGLEC14Q08ET2 396 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 MIER3Q7Z3K6 550 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 PRSS33Q8NF86 280 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 WASF1Q92558 559 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 ZSCAN31Q96LW9 406 aaPredicted RBP32.01■■■□□ 2.71
HMGB1-205ENST00000399494 CHST12Q9NRB3 414 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 DACT1Q9NYF0 836 aa32.01■■■□□ 2.71
HMGB1-205ENST00000399494 ORC3Q9UBD5 711 aaPredicted RBP32.01■■■□□ 2.71
HMGB1-205ENST00000399494 IGKV6-21A0A0C4DH24 114 aa32■■■□□ 2.71
HMGB1-205ENST00000399494 DTNBO60941 627 aa32■■■□□ 2.71
HMGB1-205ENST00000399494 XKR3Q5GH77 459 aa32■■■□□ 2.71
HMGB1-205ENST00000399494 PCDHA4Q9UN74 947 aa32■■■□□ 2.71
HMGB1-205ENST00000399494 C2orf71A6NGG8 1288 aa31.99■■■□□ 2.71
HMGB1-205ENST00000399494 MTERF2Q49AM1 385 aa31.99■■■□□ 2.71
HMGB1-205ENST00000399494 FAM177A1Q8N128 213 aaPredicted RBP31.99■■■□□ 2.71
HMGB1-205ENST00000399494 FBXL6Q8N531 539 aa31.99■■■□□ 2.71
HMGB1-205ENST00000399494 GCOM2Q9BZD3 368 aaPredicted RBP31.99■■■□□ 2.71
HMGB1-205ENST00000399494 TMEM150BA6NC51 233 aa31.98■■■□□ 2.71
HMGB1-205ENST00000399494 NT5C1B-RDH14C9J2C7 533 aa31.98■■■□□ 2.71
HMGB1-205ENST00000399494 SMC1AQ14683 1233 aaKnown RBP31.98■■■□□ 2.71
HMGB1-205ENST00000399494 CCDC83Q8IWF9 413 aa31.98■■■□□ 2.71
HMGB1-205ENST00000399494 SUGP1Q8IWZ8 645 aaKnown RBP31.98■■■□□ 2.71
HMGB1-205ENST00000399494 ASIC4Q96FT7 647 aa31.98■■■□□ 2.71
HMGB1-205ENST00000399494 SH2D3AQ9BRG2 576 aa31.98■■■□□ 2.71
HMGB1-205ENST00000399494 TRAIPQ9BWF2 469 aa31.98■■■□□ 2.71
HMGB1-205ENST00000399494 SH2B1Q9NRF2 756 aaPredicted RBP31.98■■■□□ 2.71
HMGB1-205ENST00000399494 SEPT9Q9UHD8 586 aaPredicted RBP31.98■■■□□ 2.71
HMGB1-205ENST00000399494 M0R2N6 131 aa31.97■■■□□ 2.71
HMGB1-205ENST00000399494 TDP2O95551 362 aa31.97■■■□□ 2.71
HMGB1-205ENST00000399494 ALDH7A1P49419 539 aaKnown RBP31.97■■■□□ 2.71
HMGB1-205ENST00000399494 BCAR1P56945 870 aa31.97■■■□□ 2.71
HMGB1-205ENST00000399494 PTPN21Q16825 1174 aa31.97■■■□□ 2.71
HMGB1-205ENST00000399494 NSUN7Q8NE18 718 aaKnown RBP31.97■■■□□ 2.71
HMGB1-205ENST00000399494 CASP10Q92851 521 aa31.97■■■□□ 2.71
HMGB1-205ENST00000399494 MBOAT7Q96N66 472 aa31.97■■■□□ 2.71
HMGB1-205ENST00000399494 MRPL9Q9BYD2 267 aaKnown RBP31.97■■■□□ 2.71
HMGB1-205ENST00000399494 HCFC2Q9Y5Z7 792 aa31.97■■■□□ 2.71
HMGB1-205ENST00000399494 A0A087WZ62 844 aa31.96■■■□□ 2.71
HMGB1-205ENST00000399494 PHKA2P46019 1235 aa31.96■■■□□ 2.71
HMGB1-205ENST00000399494 DNM2P50570 870 aa31.96■■■□□ 2.71
HMGB1-205ENST00000399494 GALNT17Q6IS24 598 aa31.96■■■□□ 2.71
HMGB1-205ENST00000399494 BLIDQ8IZY5 108 aa31.96■■■□□ 2.71
HMGB1-205ENST00000399494 FDXACB1Q9BRP7 624 aaPredicted RBP31.96■■■□□ 2.71
HMGB1-205ENST00000399494 CDH22Q9UJ99 828 aa31.96■■■□□ 2.71
HMGB1-205ENST00000399494 CLASP2O75122 1294 aaKnown RBP31.95■■■□□ 2.71
HMGB1-205ENST00000399494 MAFO75444 373 aaPredicted RBP31.95■■■□□ 2.71
HMGB1-205ENST00000399494 CXCL14O95715 111 aa31.95■■■□□ 2.71
HMGB1-205ENST00000399494 TPRNQ4KMQ1 711 aa31.95■■■□□ 2.71
HMGB1-205ENST00000399494 ETNPPLQ8TBG4 499 aa31.95■■■□□ 2.71
HMGB1-205ENST00000399494 PHOX2BQ99453 314 aa31.95■■■□□ 2.71
HMGB1-205ENST00000399494 PRRX2Q99811 253 aa31.95■■■□□ 2.71
HMGB1-205ENST00000399494 DDX11L8A8MPP1 907 aa31.94■■■□□ 2.7
HMGB1-205ENST00000399494 JAK2O60674 1132 aa31.94■■■□□ 2.7
HMGB1-205ENST00000399494 NPY5RQ15761 445 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms