RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 HVCN1Q96D96 273 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 SAYSD1Q9NPB0 183 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 HESX1Q9UBX0 185 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 NWD2Q9ULI1 1742 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 IVNS1ABPQ9Y6Y0 642 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 A0A0G2JND7 137 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 PPP1R37O75864 691 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 CD44P16070 742 aaKnown RBP11.56□□□□□ -0.56
CCDC40-204ENST00000397545 ADCY2Q08462 1091 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 PDXDC1Q6P996 788 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 PPP4R3CPQ6ZMV5 832 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 PPP1R16BQ96T49 567 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 TMEM206Q9H813 350 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 RGL1Q9NZL6 768 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 DOT1LQ8TEK3 1739 aa11.56□□□□□ -0.56
CCDC40-204ENST00000397545 SPATA31A6Q5VVP1 1343 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 AKAP11Q9UKA4 1901 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 RASA4BC9J798 803 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 RASA4O43374 803 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 SRGNP10124 158 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 MYO1EQ12965 1108 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 QRICH1Q2TAL8 776 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 SH2D4BQ5SQS7 431 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 CC2D2BQ6DHV5 1058 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 RHOT2Q8IXI1 618 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 C7orf31Q8N865 590 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 SCYL1Q96KG9 808 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 CYTH2Q99418 400 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 APOL6Q9BWW8 343 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 GINM1Q9NU53 330 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 FHOD1Q9Y613 1164 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 NHSL1Q5SYE7 1610 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 hCG_1984214I3L0E3 225 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 CAPN9O14815 690 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 GIPC1O14908 333 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 ZRANB2O95218 330 aaKnown RBP eCLIP11.55□□□□□ -0.56
CCDC40-204ENST00000397545 RCAN1P53805 252 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 LMNB2Q03252 620 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 NFIXQ14938 502 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 ZNF713Q8N859 430 aaPredicted RBP11.55□□□□□ -0.56
CCDC40-204ENST00000397545 ZNF384Q8TF68 577 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.55□□□□□ -0.56
CCDC40-204ENST00000397545 FAM167BQ9BTA0 163 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 SPZ1Q9BXG8 430 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 FUT8Q9BYC5 575 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 DCTN4Q9UJW0 460 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 BRAFP15056 766 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 AKR1B1P15121 316 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 SSTR3P32745 418 aaPredicted RBP11.55□□□□□ -0.56
CCDC40-204ENST00000397545 C1orf54Q8WWF1 131 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 ATP6V0A1Q93050 837 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 DYDC2Q96IM9 177 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 C11orf70Q9BRQ4 267 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 MTA3Q9BTC8 594 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 CCSER1Q9C0I3 900 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 SLC24A3Q9HC58 644 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 MYMKA6NI61 221 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 TTI1O43156 1089 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 H2AFXP16104 143 aaPredicted RBP11.55□□□□□ -0.56
CCDC40-204ENST00000397545 IRAK1P51617 712 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 PMS2P54278 862 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 POLE2P56282 527 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 YWHAEP62258 255 aaKnown RBP11.55□□□□□ -0.56
CCDC40-204ENST00000397545 KCNB1Q14721 858 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 EARS2Q5JPH6 523 aaKnown RBP11.55□□□□□ -0.56
CCDC40-204ENST00000397545 PYROXD1Q8WU10 500 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 TTC17Q96AE7 1141 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 CFAP57Q96MR6 1250 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 KCNG1Q9UIX4 513 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 AFG3L2Q9Y4W6 797 aa11.55□□□□□ -0.56
CCDC40-204ENST00000397545 CASQ2O14958 399 aaPredicted RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 P4HA1P13674 534 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 NMT1P30419 496 aaKnown RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 RFC1P35251 1148 aaPredicted RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 ERVK-24P63145 666 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 PDE1CQ14123 709 aaPredicted RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 RPS6KA2Q15349 733 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 FBXO33Q7Z6M2 555 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 MAML1Q92585 1016 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 TRIM51Q9BSJ1 452 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 TDRD3Q9H7E2 651 aaKnown RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 ZWILCHQ9H900 591 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 ADAM22Q9P0K1 906 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 PPP1R3GB7ZBB8 358 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 SLC16A4O15374 487 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 PLS3P13797 630 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 CHRNA5P30532 468 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 GPC5P78333 572 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 COG7P83436 770 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 NCAPHQ15003 741 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 SEC23AQ15436 765 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 SMAD1Q15797 465 aaKnown RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 NCAPG2Q86XI2 1143 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 ADGRF4Q8IZF3 695 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 CCNYQ8ND76 341 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 FLAD1Q8NFF5 587 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 CCT8L2Q96SF2 557 aa11.54□□□□□ -0.56
CCDC40-204ENST00000397545 MRPL47Q9HD33 250 aaKnown RBP11.54□□□□□ -0.56
CCDC40-204ENST00000397545 HPCAL4Q9UM19 191 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms