RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SRGAP2CP0DJJ0 459 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 GLRA2P23416 452 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 PHKA2P46019 1235 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 HTRA4P83105 476 aaPredicted RBP24.1■■□□□ 1.45
CLN3-207ENST00000395653 DSC3Q14574 896 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 FAM117BQ6P1L5 589 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 DEFB123Q8N688 67 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 KRI1Q8N9T8 703 aaKnown RBP24.1■■□□□ 1.45
CLN3-207ENST00000395653 ASAP3Q8TDY4 903 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 ADAM2Q99965 735 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 CCSER1Q9C0I3 900 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 TTYH1Q9H313 450 aaPredicted RBP24.1■■□□□ 1.45
CLN3-207ENST00000395653 GPRC5CQ9NQ84 441 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 C1orf112Q9NSG2 853 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 INSL6Q9Y581 213 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 CSDE1O75534 798 aaKnown RBP24.1■■□□□ 1.45
CLN3-207ENST00000395653 CA3P07451 260 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 CAPSQ13938 189 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 FAM102BQ5T8I3 360 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 Q7L0L9 218 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 MAEAQ7L5Y9 396 aa24.1■■□□□ 1.45
CLN3-207ENST00000395653 IFNLR1Q8IU57 520 aaPredicted RBP24.1■■□□□ 1.45
CLN3-207ENST00000395653 TFIP11Q9UBB9 837 aaKnown RBP24.1■■□□□ 1.45
CLN3-207ENST00000395653 PPP6R2O75170 966 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 UPP2O95045 317 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 ZSCAN20P17040 1043 aaPredicted RBP24.09■■□□□ 1.45
CLN3-207ENST00000395653 FGFR4P22455 802 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 PTENP60484 403 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 PPP2R2DQ66LE6 453 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 NPAS4Q8IUM7 802 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 PLIN2Q99541 437 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 NFKBIZQ9BYH8 718 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 SEMA6BQ9H3T3 888 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 ZNF576Q9H609 170 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 CHST12Q9NRB3 414 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 RNF216Q9NWF9 866 aaPredicted RBP24.09■■□□□ 1.45
CLN3-207ENST00000395653 ZDHHC9Q9Y397 364 aa24.09■■□□□ 1.45
CLN3-207ENST00000395653 TTC3P53804 2025 aa24.08■■□□□ 1.45
CLN3-207ENST00000395653 CHD9Q3L8U1 2897 aa24.08■■□□□ 1.45
CLN3-207ENST00000395653 C9IYK1 514 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 SPTLC2O15270 562 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 SARSP49591 514 aaKnown RBP24.08■■□□□ 1.44
CLN3-207ENST00000395653 PCBP1Q15365 356 aaKnown RBP eCLIP24.08■■□□□ 1.44
CLN3-207ENST00000395653 FOXD4L6Q3SYB3 417 aaPredicted RBP24.08■■□□□ 1.44
CLN3-207ENST00000395653 FOXD4L3Q6VB84 417 aaPredicted RBP24.08■■□□□ 1.44
CLN3-207ENST00000395653 SLC24A5Q71RS6 500 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 CATSPER4Q7RTX7 472 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 CRIPAKQ8N1N5 446 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 SYT2Q8N9I0 419 aaPredicted RBP24.08■■□□□ 1.44
CLN3-207ENST00000395653 RASSF8Q8NHQ8 419 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 KIFAP3Q92845 792 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 CLIC6Q96NY7 704 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 MINDY3Q9H8M7 445 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 COL4A6Q14031 1691 aa24.08■■□□□ 1.44
CLN3-207ENST00000395653 STAG3L1P0CL83 205 aa24.07■■□□□ 1.44
CLN3-207ENST00000395653 KARSQ15046 597 aaKnown RBP24.07■■□□□ 1.44
CLN3-207ENST00000395653 RINT1Q6NUQ1 792 aa24.07■■□□□ 1.44
CLN3-207ENST00000395653 SP7Q8TDD2 431 aaPredicted RBP24.07■■□□□ 1.44
CLN3-207ENST00000395653 SYMPKQ92797 1274 aaKnown RBP24.07■■□□□ 1.44
CLN3-207ENST00000395653 EPSTI1Q96J88 318 aa24.07■■□□□ 1.44
CLN3-207ENST00000395653 YME1L1Q96TA2 773 aa24.07■■□□□ 1.44
CLN3-207ENST00000395653 DAXXQ9UER7 740 aaPredicted RBP24.07■■□□□ 1.44
CLN3-207ENST00000395653 CFAP45Q9UL16 551 aa24.07■■□□□ 1.44
CLN3-207ENST00000395653 LCHNA4D1U4 455 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 PLA2G4BP0C869 781 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 TXLNAP40222 546 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 SPECC1Q5M775 1068 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 C1orf186Q6ZWK4 172 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 USP49Q70CQ1 688 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 RUSC1Q9BVN2 902 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 TIPINQ9BVW5 301 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 MTMR10Q9NXD2 777 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 DACT1Q9NYF0 836 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 KCND2Q9NZV8 630 aa24.06■■□□□ 1.44
CLN3-207ENST00000395653 PLCG1P19174 1290 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 SLC12A3P55017 1021 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 FAM189BP81408 668 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 TAP1Q03518 808 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 DNM1Q05193 864 aaKnown RBP24.05■■□□□ 1.44
CLN3-207ENST00000395653 PPP2R5AQ15172 486 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 KCNG4Q8TDN1 519 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 FAM161BQ96MY7 647 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 ELAC1Q9H777 363 aaKnown RBP24.05■■□□□ 1.44
CLN3-207ENST00000395653 RC3H2Q9HBD1 1191 aaKnown RBP24.05■■□□□ 1.44
CLN3-207ENST00000395653 AGPAT5Q9NUQ2 364 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 CCDC39Q9UFE4 941 aa24.05■■□□□ 1.44
CLN3-207ENST00000395653 PIN4Q9Y237 131 aaKnown RBP24.05■■□□□ 1.44
CLN3-207ENST00000395653 LRRIQ4A6NIV6 560 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 DGKIO75912 1065 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 SSBP05455 408 aaKnown RBP eCLIP24.04■■□□□ 1.44
CLN3-207ENST00000395653 GUCY2CP25092 1073 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 NAMPTP43490 491 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 MBTD1Q05BQ5 628 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 CDCA2Q69YH5 1023 aaPredicted RBP24.04■■□□□ 1.44
CLN3-207ENST00000395653 LRRC15Q8TF66 581 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 TRAIPQ9BWF2 469 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 BLOC1S4Q9NUP1 217 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 TMEM161AQ9NX61 479 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 LRFN2Q9ULH4 789 aa24.04■■□□□ 1.44
CLN3-207ENST00000395653 ATP6V1DQ9Y5K8 247 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms