RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 UBE2TQ9NPD8 197 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-203ENST00000394269 SLC9A2Q9UBY0 812 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 CHORDC1Q9UHD1 332 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-203ENST00000394269 ZNF112Q9UJU3 913 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 MARK3P27448 753 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 STAT1P42224 750 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 TNNT3P45378 269 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-203ENST00000394269 JAK3P52333 1124 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 ZNF131P52739 623 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 ACTR2P61160 394 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 VSNL1P62760 191 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 SP2Q02086 613 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 GNPTABQ3T906 1256 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 CC2D1AQ6P1N0 951 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-203ENST00000394269 OTUD6AQ7L8S5 288 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 CBWD2Q8IUF1 395 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 KRT222Q8N1A0 295 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 NEK9Q8TD19 979 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 HSPBP1Q9NZL4 362 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 JRKLQ9Y4A0 524 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 HYOU1Q9Y4L1 999 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 SSU72P8A0A1W2PR75 194 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 HNRNPDLO14979 420 aaKnown RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 HOXA7P31268 230 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 NPTX2P47972 431 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 SLC7A5Q01650 507 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 BFSP1Q12934 665 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 C9orf131Q5VYM1 1079 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 LMBRD2Q68DH5 695 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 GSPT2Q8IYD1 628 aaKnown RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 POMGNT1Q8WZA1 660 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 ABCB6Q9NP58 842 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 ZCCHC17Q9NP64 241 aaKnown RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 ACP6Q9NPH0 428 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 ZHX1Q9UKY1 873 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 ANKRD63C9JTQ0 380 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 SLC16A3O15427 465 aaKnown RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 EVI5O60447 810 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 PRKCEQ02156 737 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 STXBP2Q15833 593 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 TAF3Q5VWG9 929 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 IRF2BP2Q7Z5L9 587 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 VPS36Q86VN1 386 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 PPM1KQ8N3J5 372 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 ATP6V0A1Q93050 837 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 EDEM3Q9BZQ6 932 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 KCND2Q9NZV8 630 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 BTBD7Q9P203 1132 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 SNCAIPQ9Y6H5 919 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 POTEB2H3BUK9 544 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 PSAPP07602 524 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 VAMP7P51809 220 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 LONRF2Q1L5Z9 754 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 ASTE1Q2TB18 679 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 C4orf19Q8IY42 314 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 XXYLT1Q8NBI6 393 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 BSNDQ8WZ55 320 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 INTS2Q9H0H0 1204 aaKnown RBP12.12□□□□□ -0.47
TCOF1-203ENST00000394269 TMEM206Q9H813 350 aa12.12□□□□□ -0.47
TCOF1-203ENST00000394269 CNGA1P29973 690 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 SFNP31947 248 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 POLGP54098 1239 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-203ENST00000394269 PPP3CAQ08209 521 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 CETN1Q12798 172 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 ZNF746Q6NUN9 644 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-203ENST00000394269 NIPA1Q7RTP0 329 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 TOPORSQ9NS56 1045 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-203ENST00000394269 GINM1Q9NU53 330 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 LTBP3Q9NS15 1303 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 LRRIQ4A6NIV6 560 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 PHACTR2O75167 634 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 SASH3O75995 380 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 FDX1P10109 184 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 PROCA1Q8NCQ7 364 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-203ENST00000394269 REPS2Q8NFH8 660 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 KAT5Q92993 513 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 OSBPL9Q96SU4 736 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 AIPL1Q9NZN9 384 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 SNX12Q9UMY4 172 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 FOXN3O00409 490 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-203ENST00000394269 KCNA2P16389 499 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 PAFAH1B1P43034 410 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 FAM193AP78312 1265 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 PAPD7Q5XG87 772 aaKnown RBP12.11□□□□□ -0.47
TCOF1-203ENST00000394269 FOXR2Q6PJQ5 311 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 GOLGA5Q8TBA6 731 aa12.11□□□□□ -0.47
TCOF1-203ENST00000394269 INPP4AQ96PE3 977 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-203ENST00000394269 TUBB2AQ13885 445 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 PHLDB3Q6NSJ2 640 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 ZC3H3Q8IXZ2 948 aaKnown RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 GPRASP2Q96D09 838 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 FAM213AQ9BRX8 229 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 TUBB2BQ9BVA1 445 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 SIX2Q9NPC8 291 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 ADARB2Q9NS39 739 aaKnown RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 MAP3K20Q9NYL2 800 aaKnown RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 NAGPAQ9UK23 515 aa12.1□□□□□ -0.47
TCOF1-203ENST00000394269 DBR1Q9UK59 544 aaKnown RBP12.1□□□□□ -0.47
TCOF1-203ENST00000394269 TBX20Q9UMR3 447 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms