RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 RIT2Q99578 217 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 HINFPQ9BQA5 517 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 GLIS2Q9BZE0 524 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 FBXL5Q9UKA1 691 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 SAMM50Q9Y512 469 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 PCDHGC5Q9Y5F6 944 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 TMCO5BA8MYB1 307 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 TBC1D12O60347 775 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 EXOC3O60645 756 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 MYBL2P10244 700 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 ARP10275 920 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 CALRP27797 417 aaKnown RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 AARSP49588 968 aaKnown RBP eCLIP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 FRMPD4Q14CM0 1322 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 MMS22LQ6ZRQ5 1243 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 ZNF571Q7Z3V5 609 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 IRF2BP2Q7Z5L9 587 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 MCF2L2Q86YR7 1114 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 MXRA8Q9BRK3 442 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 LXNQ9BS40 222 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 PACSIN1Q9BY11 444 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 DEFB129Q9H1M3 183 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 UNC45AQ9H3U1 944 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 RMI1Q9H9A7 625 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 SMARCAL1Q9NZC9 954 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 LARSQ9P2J5 1176 aaKnown RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 DMGDHQ9UI17 866 aaKnown RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 TGFB1I1O43294 461 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 ABCD1P33897 745 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 PRKCIP41743 596 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 KCNA1Q09470 495 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 CETN1Q12798 172 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 MEI1Q5TIA1 1274 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 PRAMEF18Q5VWM3 479 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 EMBQ6PCB8 327 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 KLHL23Q8NBE8 558 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 U2AF1L4Q8WU68 220 aaKnown RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 MS4A14Q96JA4 679 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 FAM204AQ9H8W3 233 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 TMEM165Q9HC07 324 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 RBM12Q9NTZ6 932 aaKnown RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 EHD2Q9NZN4 543 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 NAGPAQ9UK23 515 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 GOLGB1Q14789 3259 aaKnown RBP10.47□□□□□ -0.73
COL6A3-204ENST00000392003 BTNL10A8MVZ5 291 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 NFKBIEO00221 500 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 OPA1O60313 960 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 HSF2BPO75031 334 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 GFPT2O94808 682 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 IBSPP21815 317 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-204ENST00000392003 MNAT1P51948 309 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 PAK2Q13177 524 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 NFIL3Q16649 462 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 TBC1D25Q3MII6 688 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 ZNF720Q7Z2F6 126 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 TRMT1LQ7Z2T5 733 aaKnown RBP10.47□□□□□ -0.73
COL6A3-204ENST00000392003 MTMR14Q8NCE2 650 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 HOOK2Q96ED9 719 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 HACL1Q9UJ83 578 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 KCNK3O14649 394 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 SKAP2O75563 359 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-204ENST00000392003 PYGLP06737 847 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 SPP2Q13103 211 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 PLS1Q14651 629 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 SYCE1Q8N0S2 351 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 PBKQ96KB5 322 aa10.47□□□□□ -0.73
COL6A3-204ENST00000392003 CPSF2Q9P2I0 782 aaKnown RBP10.47□□□□□ -0.73
COL6A3-204ENST00000392003 K7ENM7 598 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 ZBTB39O15060 712 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 ZBED4O75132 1171 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 LMNB1P20700 586 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 FMO5P49326 533 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 RNASE9P60153 205 aaKnown RBP10.46□□□□□ -0.73
COL6A3-204ENST00000392003 MRPS25P82663 173 aaKnown RBP10.46□□□□□ -0.73
COL6A3-204ENST00000392003 NSMFQ6X4W1 530 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 AENQ8WTP8 325 aaKnown RBP10.46□□□□□ -0.73
COL6A3-204ENST00000392003 HDAC7Q8WUI4 952 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 TSPAN18Q96SJ8 248 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 CNTNAP1P78357 1384 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 CEP104O60308 925 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 HIP1RO75146 1068 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 HEXIM1O94992 359 aaKnown RBP10.46□□□□□ -0.73
COL6A3-204ENST00000392003 EGFRP00533 1210 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 OATP04181 439 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 ICAM1P05362 532 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 P4HBP07237 508 aaKnown RBP10.46□□□□□ -0.73
COL6A3-204ENST00000392003 ACTN2P35609 894 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 MYL7Q01449 175 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 ALCAMQ13740 583 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 MAEAQ7L5Y9 396 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 PEX26Q7Z412 305 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 IFT81Q8WYA0 676 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 CEP89Q96ST8 783 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 BCAS3Q9H6U6 928 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 AGPAT3Q9NRZ7 376 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 SEPT11Q9NVA2 429 aaKnown RBP10.46□□□□□ -0.73
COL6A3-204ENST00000392003 DNAJC12Q9UKB3 198 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 PACSIN2Q9UNF0 486 aaPredicted RBP10.46□□□□□ -0.73
COL6A3-204ENST00000392003 CD2APQ9Y5K6 639 aa10.46□□□□□ -0.73
COL6A3-204ENST00000392003 SOX5P35711 763 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms