RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 POP1Q99575 1024 aaKnown RBP11.77□□□□□ -0.52
NEDD9-201ENST00000379433 TTYH3Q9C0H2 523 aa11.77□□□□□ -0.52
NEDD9-201ENST00000379433 L2HGDHQ9H9P8 463 aa11.77□□□□□ -0.52
NEDD9-201ENST00000379433 A1CFQ9NQ94 594 aaKnown RBP11.77□□□□□ -0.52
NEDD9-201ENST00000379433 FBXO9Q9UK97 447 aaPredicted RBP11.77□□□□□ -0.52
NEDD9-201ENST00000379433 MRFAP1Q9Y605 127 aa11.77□□□□□ -0.52
NEDD9-201ENST00000379433 CAPN6Q9Y6Q1 641 aa11.77□□□□□ -0.52
NEDD9-201ENST00000379433 RBM47A0AV96 593 aaKnown RBP11.77□□□□□ -0.53
NEDD9-201ENST00000379433 TGFB1I1O43294 461 aa11.77□□□□□ -0.53
NEDD9-201ENST00000379433 FTCDO95954 541 aa11.77□□□□□ -0.53
NEDD9-201ENST00000379433 GCLMP48507 274 aa11.77□□□□□ -0.53
NEDD9-201ENST00000379433 PPP2R5CQ13362 524 aa11.77□□□□□ -0.53
NEDD9-201ENST00000379433 EPHA7Q15375 998 aa11.77□□□□□ -0.53
NEDD9-201ENST00000379433 GBP3Q9H0R5 595 aa11.77□□□□□ -0.53
NEDD9-201ENST00000379433 PCDHA13Q9Y5I0 950 aa11.77□□□□□ -0.53
NEDD9-201ENST00000379433 ARFGEF1Q9Y6D6 1849 aa11.77□□□□□ -0.53
NEDD9-201ENST00000379433 HMGB1P1B2RPK0 211 aaPredicted RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 PPP1R12BO60237 982 aaPredicted RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 P4HBP07237 508 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 DLATP10515 647 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 ABCB4P21439 1286 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 HSD17B4P51659 736 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 CLCN6P51797 869 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 DLG4P78352 724 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 MAP3K9P80192 1104 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 ZSCAN26Q16670 478 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 C9orf131Q5VYM1 1079 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 TRIM59Q8IWR1 403 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 HAUS4Q9H6D7 363 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 SUGCTQ9HAC7 445 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 SPON1Q9HCB6 807 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 HYOU1Q9Y4L1 999 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 AFPP02771 609 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 RPL13P26373 211 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 LLGL1Q15334 1064 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 APOBEC3FQ8IUX4 373 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 NOA1Q8NC60 698 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 PPP1R13LQ8WUF5 828 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 ANKRD7Q92527 254 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 ACP6Q9NPH0 428 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 MAP3K20Q9NYL2 800 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 NOL4O94818 638 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 RARRES1P49788 294 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 KIAA0753Q2KHM9 967 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 SUPT20HL1Q3ZLR7 823 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 SLC9C1Q4G0N8 1177 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 TTC19Q6DKK2 380 aaPredicted RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 MCTP2Q6DN12 878 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 ZNF720Q7Z2F6 126 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 ZBTB10Q96DT7 871 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 TUFT1Q9NNX1 390 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 TYW1Q9NV66 732 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 LARSQ9P2J5 1176 aaKnown RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 SALL4Q9UJQ4 1053 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 AJAP1Q9UKB5 411 aaPredicted RBP11.76□□□□□ -0.53
NEDD9-201ENST00000379433 MYO6Q9UM54 1294 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 PLAGL2Q9UPG8 496 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 PITPNM2Q9BZ72 1349 aa11.76□□□□□ -0.53
NEDD9-201ENST00000379433 A0A087X0T9 212 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 POLR3GO15318 223 aaPredicted RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 DHX15O43143 795 aaKnown RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 TLR2O60603 784 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 TADA3O75528 432 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 FAM228BP0C875 321 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 PPARDQ03181 441 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 IFT88Q13099 833 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 GPR162Q16538 588 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 SEZ6Q53EL9 994 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 TAX1BP1Q86VP1 789 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 DAW1Q8N136 415 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 TMEM143Q96AN5 459 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 TEX13BQ9BXU2 312 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 USP2O75604 605 aaPredicted RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 CALCAP01258 141 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 ASIC2Q16515 512 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 CBWD6Q4V339 395 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 CBWD3Q5JTY5 395 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 CBWD5Q5RIA9 395 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 CC2D1AQ6P1N0 951 aaPredicted RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 NFRKBQ6P4R8 1299 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 UPF1Q92900 1129 aaKnown RBP eCLIP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 PARD6BQ9BYG5 372 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 CPSF2Q9P2I0 782 aaKnown RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 RABL2AQ9UBK7 228 aaPredicted RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 CDC23Q9UJX2 597 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 ZNF214Q9UL59 606 aaPredicted RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 COMMD10Q9Y6G5 202 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 SPDYE16A6NNV3 312 aaPredicted RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 UCHL3P15374 230 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 PDXDC1Q6P996 788 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 TMCO3Q6UWJ1 677 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 GSPT2Q8IYD1 628 aaKnown RBP11.75□□□□□ -0.53
NEDD9-201ENST00000379433 GPC2Q8N158 579 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 BAP1Q92560 729 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 VPS33BQ9H267 617 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 AGPAT3Q9NRZ7 376 aa11.75□□□□□ -0.53
NEDD9-201ENST00000379433 CTAGE15A4D2H0 777 aa11.74□□□□□ -0.53
NEDD9-201ENST00000379433 CTAGE8P0CG41 777 aa11.74□□□□□ -0.53
NEDD9-201ENST00000379433 YBX3P16989 372 aaKnown RBP eCLIP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms