RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NOP2P46087 812 aaKnown RBP14.57□□□□□ -0.08
CCDC3-202ENST00000378839 NPEPPSP55786 919 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 MTMR1Q13613 665 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 PLA2G4FQ68DD2 849 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 FOXR1Q6PIV2 292 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 SLFN11Q7Z7L1 901 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 ARHGEF19Q8IW93 802 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 TXLNBQ8N3L3 684 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 KIAA1683Q9H0B3 1180 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 MED4Q9NPJ6 270 aa14.57□□□□□ -0.08
CCDC3-202ENST00000378839 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.57□□□□□ -0.08
CCDC3-202ENST00000378839 UBE4BO95155 1302 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 NFKBIEO00221 500 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 FOXN3O00409 490 aaPredicted RBP14.56□□□□□ -0.08
CCDC3-202ENST00000378839 WDR46O15213 610 aaKnown RBP14.56□□□□□ -0.08
CCDC3-202ENST00000378839 RAD51CO43502 376 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 EXOC3O60645 756 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 GPS2Q13227 327 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 PRAMEF18Q5VWM3 479 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 CIAPIN1Q6FI81 312 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 SLC9A9Q8IVB4 645 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 METTL13Q8N6R0 699 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 CASKIN2Q8WXE0 1202 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 ELMO3Q96BJ8 720 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 ARHGEF26Q96DR7 871 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 NFU1Q9UMS0 254 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 FRMD4BQ9Y2L6 1034 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 FLOT1O75955 427 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 STAT1P42224 750 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 SOX10P56693 466 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 ARHGAP44Q17R89 818 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 C10orf76Q5T2E6 689 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 NBPF12Q5TAG4 269 aaPredicted RBP14.56□□□□□ -0.08
CCDC3-202ENST00000378839 HS2ST1Q7LGA3 356 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 SLC20A1Q8WUM9 679 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 KAT5Q92993 513 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 KIFC3Q9BVG8 833 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 EPB41L5Q9HCM4 733 aa14.56□□□□□ -0.08
CCDC3-202ENST00000378839 LUC7LQ9NQ29 371 aaKnown RBP14.56□□□□□ -0.08
CCDC3-202ENST00000378839 HEXIM1O94992 359 aaKnown RBP14.55□□□□□ -0.08
CCDC3-202ENST00000378839 MYCLP12524 364 aaPredicted RBP14.55□□□□□ -0.08
CCDC3-202ENST00000378839 YWHABP31946 246 aaKnown RBP14.55□□□□□ -0.08
CCDC3-202ENST00000378839 GUCY2DQ02846 1103 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 SYCP3Q8IZU3 236 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 AP1M1Q9BXS5 423 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 APEX2Q9UBZ4 518 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 COG5Q9UP83 839 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 SAMM50Q9Y512 469 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 ITGA4P13612 1032 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 FERP16591 822 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 TNFRSF8P28908 595 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 ZNF280AP59817 542 aaPredicted RBP14.55□□□□□ -0.08
CCDC3-202ENST00000378839 MYL7Q01449 175 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 RPS6KA1Q15418 735 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 KLHL7Q8IXQ5 586 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 RPAP3Q9H6T3 665 aaPredicted RBP14.55□□□□□ -0.08
CCDC3-202ENST00000378839 DBR1Q9UK59 544 aaKnown RBP14.55□□□□□ -0.08
CCDC3-202ENST00000378839 PPP1R9AQ9ULJ8 1098 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 EMSYQ7Z589 1322 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 H2AFZP0C0S5 128 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 QARSP47897 775 aaKnown RBP14.55□□□□□ -0.08
CCDC3-202ENST00000378839 H2AFVQ71UI9 128 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 NIPA1Q7RTP0 329 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 NT5DC3Q86UY8 548 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 SCFD2Q8WU76 684 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 PIK3R5Q8WYR1 880 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 ATG4CQ96DT6 458 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 ACP6Q9NPH0 428 aa14.55□□□□□ -0.08
CCDC3-202ENST00000378839 SLC16A4O15374 487 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 ADRB2P07550 413 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 PLS3P13797 630 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 ECHS1P30084 290 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 ADSSP30520 456 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 GCLMP48507 274 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 PPP2R5AQ15172 486 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 HSP90B2PQ58FF3 399 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 IFT81Q8WYA0 676 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 PDCD2LQ9BRP1 358 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 PXMP2Q9NR77 195 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 RNF14Q9UBS8 474 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 NR2E1Q9Y466 385 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 PARP14Q460N5 1801 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 GOLGA8IPA6NC78 632 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 GOLGA6BA6NDN3 693 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 GOLGA8JA6NMD2 632 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 ANKRD63C9JTQ0 380 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 ABCB4P21439 1286 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 DCAF12L1Q5VU92 463 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 SLC35G2Q8TBE7 412 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 LPAR1Q92633 364 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 CAVIN3Q969G5 261 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 ZKSCAN4Q969J2 545 aaPredicted RBP14.54□□□□□ -0.08
CCDC3-202ENST00000378839 FAM84AQ96KN4 292 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 VPS33BQ9H267 617 aa14.54□□□□□ -0.08
CCDC3-202ENST00000378839 BUB1BO60566 1050 aaPredicted RBP14.53□□□□□ -0.08
CCDC3-202ENST00000378839 PEX3P56589 373 aa14.53□□□□□ -0.08
CCDC3-202ENST00000378839 TAF3Q5VWG9 929 aa14.53□□□□□ -0.08
CCDC3-202ENST00000378839 ANO5Q75V66 913 aa14.53□□□□□ -0.08
CCDC3-202ENST00000378839 C10orf67Q8IYJ2 551 aa14.53□□□□□ -0.08
CCDC3-202ENST00000378839 NEK9Q8TD19 979 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms