RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PALB2Q86YC2 1186 aa17.13■□□□□ 0.33
CKAP4-201ENST00000378026 CCDC105Q8IYK2 499 aa17.13■□□□□ 0.33
CKAP4-201ENST00000378026 KRT35Q92764 455 aa17.13■□□□□ 0.33
CKAP4-201ENST00000378026 CEP95Q96GE4 821 aa17.13■□□□□ 0.33
CKAP4-201ENST00000378026 SH3GL3Q99963 347 aa17.13■□□□□ 0.33
CKAP4-201ENST00000378026 PAIP2Q9BPZ3 127 aaKnown RBP17.13■□□□□ 0.33
CKAP4-201ENST00000378026 HOMER3Q9NSC5 361 aa17.13■□□□□ 0.33
CKAP4-201ENST00000378026 ZMYND8Q9ULU4 1186 aaPredicted RBP17.13■□□□□ 0.33
CKAP4-201ENST00000378026 H0Y3Z8 333 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 CRKLP46109 303 aaKnown RBP17.12■□□□□ 0.33
CKAP4-201ENST00000378026 KCNA1Q09470 495 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 EPHA7Q15375 998 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 ARHGAP44Q17R89 818 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 GALNTL6Q49A17 601 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 PARP10Q53GL7 1025 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 TTC27Q6P3X3 843 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 CLEC10AQ8IUN9 316 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 BSDC1Q9NW68 430 aaPredicted RBP17.12■□□□□ 0.33
CKAP4-201ENST00000378026 CAMTA2O94983 1202 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 PRKCIP41743 596 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 ZNF131P52739 623 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 PABPC4Q13310 644 aaKnown RBP eCLIP17.12■□□□□ 0.33
CKAP4-201ENST00000378026 GRIK5Q16478 980 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 LRRC47Q8N1G4 583 aaKnown RBP17.12■□□□□ 0.33
CKAP4-201ENST00000378026 RFFLQ8WZ73 363 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 NAF1Q96HR8 494 aaKnown RBP17.12■□□□□ 0.33
CKAP4-201ENST00000378026 SIX2Q9NPC8 291 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 ARHGEF3Q9NR81 526 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 CORO1CQ9ULV4 474 aaPredicted RBP17.12■□□□□ 0.33
CKAP4-201ENST00000378026 TOGARAM1Q9Y4F4 1720 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 FAM187AA6NFU0 413 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 BLMHQ13867 455 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 CCDC137Q6PK04 289 aaKnown RBP17.12■□□□□ 0.33
CKAP4-201ENST00000378026 SMIM5Q71RC9 77 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 SLC51AQ86UW1 340 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 SFR1Q86XK3 245 aa17.12■□□□□ 0.33
CKAP4-201ENST00000378026 LBHD1Q9BQE6 289 aaPredicted RBP17.12■□□□□ 0.33
CKAP4-201ENST00000378026 TCRBV7S2A1N4TA0A589 114 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 SFI1A8K8P3 1242 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 RFC4P35249 363 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 PCK1P35558 622 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 PSMC6P62333 389 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 ARSHQ5FYA8 562 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 INTS5Q6P9B9 1019 aaKnown RBP17.11■□□□□ 0.33
CKAP4-201ENST00000378026 PRELID2Q8N945 189 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 TMEM237Q96Q45 408 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 NAP1L3Q99457 506 aaPredicted RBP17.11■□□□□ 0.33
CKAP4-201ENST00000378026 COG5Q9UP83 839 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 ARL2BPQ9Y2Y0 163 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 A0A0A6YYK5 440 aaPredicted RBP17.11■□□□□ 0.33
CKAP4-201ENST00000378026 HIP1RO75146 1068 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 LRRN2O75325 713 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 CTCFP49711 727 aaPredicted RBP17.11■□□□□ 0.33
CKAP4-201ENST00000378026 DHX34Q14147 1143 aaKnown RBP17.11■□□□□ 0.33
CKAP4-201ENST00000378026 SLMAPQ14BN4 828 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 ZDHHC14Q8IZN3 488 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 CNKSR1Q969H4 720 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 CRAMP1Q96RY5 1269 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 CARD9Q9H257 536 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 CCDC87Q9NVE4 849 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 ZFATQ9P243 1243 aa17.11■□□□□ 0.33
CKAP4-201ENST00000378026 DPPA5A6NC42 116 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 OAS1P00973 400 aaKnown RBP17.1■□□□□ 0.33
CKAP4-201ENST00000378026 PTGIRP43119 386 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 CDK8P49336 464 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 TGS1Q96RS0 853 aaKnown RBP17.1■□□□□ 0.33
CKAP4-201ENST00000378026 STMN4Q9H169 189 aaPredicted RBP17.1■□□□□ 0.33
CKAP4-201ENST00000378026 CCDC134Q9H6E4 229 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 USP40Q9NVE5 1235 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 ALG6Q9Y672 507 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 PFASO15067 1338 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 RSPH10B2B2RC85 870 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 RSPH10BP0C881 870 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 PPATQ06203 517 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 MGAT5Q09328 741 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 DRAP1Q14919 205 aaPredicted RBP17.1■□□□□ 0.33
CKAP4-201ENST00000378026 KNOP1Q1ED39 458 aaKnown RBP17.1■□□□□ 0.33
CKAP4-201ENST00000378026 SPDYCQ5MJ68 293 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 FRMD5Q7Z6J6 570 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 TBC1D16Q8TBP0 767 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 CTTNBP2NLQ9P2B4 639 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 ANKRD36CQ5JPF3 1778 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 MED24O75448 989 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 FERP16591 822 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 ATP4AP20648 1035 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 TNFAIP3P21580 790 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 STX2P32856 288 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 RAD23BP54727 409 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 MPP2Q14168 576 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 SEPT2Q15019 361 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 EDRF1Q3B7T1 1238 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 NT5C3AQ9H0P0 336 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.1■□□□□ 0.33
CKAP4-201ENST00000378026 KLHL14Q9P2G3 628 aa17.1■□□□□ 0.33
CKAP4-201ENST00000378026 TTC7AQ9ULT0 858 aaPredicted RBP17.1■□□□□ 0.33
CKAP4-201ENST00000378026 RAD21O60216 631 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 PHF2O75151 1096 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 SMIM24O75264 130 aa17.09■□□□□ 0.33
CKAP4-201ENST00000378026 LDHBP07195 334 aaKnown RBP17.09■□□□□ 0.33
CKAP4-201ENST00000378026 VCAM1P19320 739 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms