RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 CCL15Q16663 113 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 LMBRD2Q68DH5 695 aaPredicted RBP15.64■□□□□ 0.09
TCOF1-202ENST00000377797 DNAJC24Q6P3W2 148 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 CEP128Q6ZU80 1094 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 ANKEF1Q9NU02 776 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 MAP3K20Q9NYL2 800 aaKnown RBP15.64■□□□□ 0.09
TCOF1-202ENST00000377797 TXNDC16Q9P2K2 825 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 FZD1Q9UP38 647 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 UCHL3P15374 230 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 NAA30Q147X3 362 aaPredicted RBP15.64■□□□□ 0.09
TCOF1-202ENST00000377797 TMEM270Q6UE05 265 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 PROCA1Q8NCQ7 364 aaPredicted RBP15.64■□□□□ 0.09
TCOF1-202ENST00000377797 PBKQ96KB5 322 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 PNMA5Q96PV4 448 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 EPB41L5Q9HCM4 733 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 CCDC151A5D8V7 595 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 CAPN9O14815 690 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 ADCY8P40145 1251 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 FMO5P49326 533 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 PSMC6P62333 389 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 MYO1EQ12965 1108 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 UAP1Q16222 522 aaPredicted RBP15.64■□□□□ 0.09
TCOF1-202ENST00000377797 FBXO41Q8TF61 875 aa15.64■□□□□ 0.09
TCOF1-202ENST00000377797 FAM237AA0A1B0GTK4 181 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 ANO9A1A5B4 782 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 BFSP1Q12934 665 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 CENPPQ6IPU0 288 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 CPLX4Q7Z7G2 160 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 ZNF148Q9UQR1 794 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 PPP2R3BQ9Y5P8 575 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 EIF3DO15371 548 aaKnown RBP eCLIP15.63■□□□□ 0.098e-7■□□□□ 8.1
TCOF1-202ENST00000377797 EPHX2P34913 555 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 ACTR2P61160 394 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 GIT2Q14161 759 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 KRT81Q14533 505 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 NT5DC1Q5TFE4 455 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 GPC2Q8N158 579 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 GLIS2Q9BZE0 524 aaPredicted RBP15.63■□□□□ 0.09
TCOF1-202ENST00000377797 CTNNA1P35221 906 aaKnown RBP15.63■□□□□ 0.09
TCOF1-202ENST00000377797 EFNA5P52803 228 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 TAF1CQ15572 869 aaPredicted RBP15.63■□□□□ 0.09
TCOF1-202ENST00000377797 RPUSD2Q8IZ73 545 aaKnown RBP15.63■□□□□ 0.09
TCOF1-202ENST00000377797 RNF10Q8N5U6 811 aaKnown RBP15.63■□□□□ 0.09
TCOF1-202ENST00000377797 ERGIC2Q96RQ1 377 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 ATP2C2O75185 946 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 ACOT2P49753 483 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 EMC2Q15006 297 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 FAM149B1Q96BN6 582 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 SEMA6BQ9H3T3 888 aa15.63■□□□□ 0.09
TCOF1-202ENST00000377797 SOX5P35711 763 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 SHROOM1Q2M3G4 852 aaPredicted RBP15.62■□□□□ 0.09
TCOF1-202ENST00000377797 PPP1R2P3Q6NXS1 205 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 WNT7AO00755 349 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 MED7O43513 233 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 IVLP07476 585 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 CDKAL1Q5VV42 579 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 GPRC5AQ8NFJ5 357 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 RDM1Q8NG50 284 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 RSAD2Q8WXG1 361 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 TSNARE1Q96NA8 513 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 HDAC6Q9UBN7 1215 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 CNOT8Q9UFF9 292 aaKnown RBP15.62■□□□□ 0.09
TCOF1-202ENST00000377797 YDJCA8MPS7 323 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 VWA5AO00534 786 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 E2F4Q16254 413 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 SNRNP35Q16560 246 aaKnown RBP15.62■□□□□ 0.09
TCOF1-202ENST00000377797 TATDN1Q6P1N9 297 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 NKX2-3Q8TAU0 364 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 NSRP1Q9H0G5 558 aaKnown RBP15.62■□□□□ 0.09
TCOF1-202ENST00000377797 ADAM22Q9P0K1 906 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 TRPM3Q9HCF6 1732 aaPredicted RBP15.62■□□□□ 0.09
TCOF1-202ENST00000377797 MRPS25P82663 173 aaKnown RBP15.62■□□□□ 0.09
TCOF1-202ENST00000377797 ZNF699Q32M78 642 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 DENND2CQ68D51 928 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 GRK7Q8WTQ7 553 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 SCFD2Q8WU76 684 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 SNX25Q9H3E2 840 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 SMARCAD1Q9H4L7 1026 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 GPRC5CQ9NQ84 441 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 SYNPO2Q9UMS6 1093 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 PTPN22Q9Y2R2 807 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 DAAM1Q9Y4D1 1078 aa15.62■□□□□ 0.09
TCOF1-202ENST00000377797 ZNF18P17022 549 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 ZSCAN20P17040 1043 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-202ENST00000377797 FBXO38Q6PIJ6 1188 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 PASD1Q8IV76 773 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 SAMD3Q8N6K7 520 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 HEXIM2Q96MH2 286 aaKnown RBP15.61■□□□□ 0.09
TCOF1-202ENST00000377797 MTMR9Q96QG7 549 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 MKNK1Q9BUB5 465 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 BLOC1S4Q9NUP1 217 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 STIM2Q9P246 746 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 SUCLA2Q9P2R7 463 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-202ENST00000377797 RFX1P22670 979 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 CLCN6P51797 869 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 CEP85LQ5SZL2 805 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 PCNX4Q63HM2 1172 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 KIFC3Q9BVG8 833 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 AP1M1Q9BXS5 423 aa15.61■□□□□ 0.09
TCOF1-202ENST00000377797 PXMP2Q9NR77 195 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms