RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 ANKS4BQ8N8V4 417 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 UHMK1Q8TAS1 419 aaKnown RBP12.02□□□□□ -0.49
CCDC40-203ENST00000374877 RAB17Q9H0T7 212 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 IGKV6D-41A0A0C4DH26 115 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 POTEFA5A3E0 1075 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 hCG_1984214I3L0E3 225 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 DDX3XO00571 662 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC40-203ENST00000374877 ECM2O94769 699 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-203ENST00000374877 POTEIP0CG38 1075 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 ZBTB48P10074 688 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-203ENST00000374877 GMPSP49915 693 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-203ENST00000374877 PLTPP55058 493 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 XRCC4Q13426 336 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 LACTB2Q53H82 288 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-203ENST00000374877 ERMARDQ5T6L9 678 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 POTEGQ6S5H5 508 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 POTEEQ6S8J3 1075 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 SH3BP5LQ7L8J4 393 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 TEX2Q8IWB9 1127 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 RASGEF1CQ8N431 466 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 ZNF713Q8N859 430 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-203ENST00000374877 FAM129AQ9BZQ8 928 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 GCNT4Q9P109 453 aa12.02□□□□□ -0.49
CCDC40-203ENST00000374877 BUB1BO60566 1050 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 CACNB3P54284 484 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 GALCP54803 685 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 EIF3BP55884 814 aaKnown RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 ZNF211Q13398 564 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 PPP4R3CPQ6ZMV5 832 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 GLG1Q92896 1179 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 DICER1Q9UPY3 1922 aaKnown RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 DDTLA6NHG4 134 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 CCT8L1PA6NM43 557 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 BHMG1C9JSJ3 638 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 MEIS1O00470 390 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 SLC8A1P32418 973 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 DR1Q01658 176 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 TATDN1Q6P1N9 297 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 PNMA8AQ86V59 439 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 TCP11Q8WWU5 503 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 P3H4Q92791 437 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 CUL5Q93034 780 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 CCDC113Q9H0I3 377 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 KDM4CQ9H3R0 1056 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 SEPT11Q9NVA2 429 aaKnown RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 HERC5Q9UII4 1024 aaKnown RBP12.01□□□□□ -0.49
CCDC40-203ENST00000374877 STXBP5LQ9Y2K9 1186 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 ZNF541Q9H0D2 1346 aa12.01□□□□□ -0.49
CCDC40-203ENST00000374877 AKAP3O75969 853 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 KRT13P13646 458 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 SLC16A2P36021 539 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 CLNS1AP54105 237 aaKnown RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 PABPC4Q13310 644 aaKnown RBP eCLIP12□□□□□ -0.49
CCDC40-203ENST00000374877 DENND2CQ68D51 928 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 FRMD5Q7Z6J6 570 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 SLFN11Q7Z7L1 901 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 SFR1Q86XK3 245 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 GPC2Q8N158 579 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 ATP8B4Q8TF62 1192 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 TLCD1Q96CP7 247 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 FAM212AQ96EL1 285 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 SNX24Q9Y343 169 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 DAAM1Q9Y4D1 1078 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 PCDHB13Q9Y5F0 798 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 CNTNAP1P78357 1384 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 SIPA1L1O43166 1804 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 WNT10BO00744 389 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 CLIC2O15247 247 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 KIF1CO43896 1103 aaKnown RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 PPP1R12BO60237 982 aaPredicted RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 PPFIA2O75334 1257 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 VIMP08670 466 aaKnown RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 CLTAP09496 248 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 GBP2P32456 591 aaPredicted RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 PRKCIP41743 596 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 IFNAR2P48551 515 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 TCP10Q12799 353 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 KNOP1Q1ED39 458 aaKnown RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 FAM133BQ5BKY9 247 aaKnown RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 DPY19L2P1Q6NXN4 242 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 GLYCTKQ8IVS8 523 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 NEK9Q8TD19 979 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 HES6Q96HZ4 224 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 PPP1R9AQ9ULJ8 1098 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 GOLGA6L10A0A0M3HER8 536 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 RGS16O15492 202 aaPredicted RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 RAD21O60216 631 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 MED24O75448 989 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 DNAJC8O75937 253 aaPredicted RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 CASP4P49662 377 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 MRPL12P52815 198 aaKnown RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 PMS2P54278 862 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 ELF3P78545 371 aaPredicted RBP12□□□□□ -0.49
CCDC40-203ENST00000374877 ASPRV1Q53RT3 343 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 ARSHQ5FYA8 562 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 TTBK2Q6IQ55 1244 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 KIRREL3Q8IZU9 778 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 CCDC63Q8NA47 563 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 SLC35G2Q8TBE7 412 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 ELAC2Q9BQ52 826 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms