RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FMO5P49326 533 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 IFI35P80217 286 aaPredicted RBP17.74■□□□□ 0.43
SDC4-201ENST00000372733 XRCC4Q13426 336 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 NEDD9Q14511 834 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 TBC1D16Q8TBP0 767 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 PIGOQ8TEQ8 1089 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 STK33Q9BYT3 514 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 MTFR1LQ9H019 292 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 RABGAP1Q9Y3P9 1069 aa17.74■□□□□ 0.43
SDC4-201ENST00000372733 EML1O00423 815 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 KIAA0391O15091 583 aaKnown RBP17.73■□□□□ 0.43
SDC4-201ENST00000372733 LRRN2O75325 713 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 MAPK7Q13164 816 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 E2F5Q15329 346 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 ARHGAP44Q17R89 818 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 USH1GQ495M9 461 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 KIAA1755Q5JYT7 1200 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 MOXD1Q6UVY6 613 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 GIMAP7Q8NHV1 300 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 CYP2W1Q8TAV3 490 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 GLT8D2Q9H1C3 349 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 VAV3Q9UKW4 847 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 TRIM37O94972 964 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 PSMC2P35998 433 aaKnown RBP17.73■□□□□ 0.43
SDC4-201ENST00000372733 AP3B2Q13367 1082 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 SPDYCQ5MJ68 293 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 KDM4CQ9H3R0 1056 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 USP40Q9NVE5 1235 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 GRHL1Q9NZI5 618 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 RPTORQ8N122 1335 aa17.73■□□□□ 0.43
SDC4-201ENST00000372733 AHDC1Q5TGY3 1603 aaPredicted RBP17.72■□□□□ 0.43
SDC4-201ENST00000372733 CCT8L1PA6NM43 557 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 TMEM110-MUSTN1A8MSY1 372 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 MSH4O15457 936 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 VCAM1P19320 739 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 MMP13P45452 471 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 SCNN1DP51172 638 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 CYP2J2P51589 502 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 SLC29A2Q14542 456 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 WLSQ5T9L3 541 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 LRRC34Q8IZ02 419 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 KRT35Q92764 455 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 CENPTQ96BT3 561 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 EIF2AK1Q9BQI3 630 aaKnown RBP17.72■□□□□ 0.43
SDC4-201ENST00000372733 INTS2Q9H0H0 1204 aaKnown RBP17.72■□□□□ 0.43
SDC4-201ENST00000372733 BCS1LQ9Y276 419 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 C10orf71Q711Q0 1435 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 FAM187AA6NFU0 413 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 UBAP1LF5GYI3 381 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 RIMBP2O15034 1052 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 DNAJC8O75937 253 aaPredicted RBP17.72■□□□□ 0.43
SDC4-201ENST00000372733 FAM13AO94988 1023 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 SLCO1A2P46721 670 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 Q4G0T1 1027 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 RINT1Q6NUQ1 792 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 CERS5Q8N5B7 392 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 MYCT1Q8N699 235 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 P3H4Q92791 437 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 NAP1L3Q99457 506 aaPredicted RBP17.72■□□□□ 0.43
SDC4-201ENST00000372733 SEMA4AQ9H3S1 761 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.72■□□□□ 0.439e-11■■■■□ 21.4
SDC4-201ENST00000372733 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.72■□□□□ 0.43
SDC4-201ENST00000372733 FRMPD4Q14CM0 1322 aa17.72■□□□□ 0.43
SDC4-201ENST00000372733 RGS16O15492 202 aaPredicted RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 EYA4O95677 639 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 GHRP10912 638 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 TNFAIP3P21580 790 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 FGFR4P22455 802 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 RPL21P46778 160 aaKnown RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 DHX34Q14147 1143 aaKnown RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 CTTNQ14247 550 aaKnown RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 MSL1Q68DK7 614 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 EPS8L3Q8TE67 593 aaKnown RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 SLC20A1Q8WUM9 679 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 PGM2Q96G03 612 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 OLFML3Q9NRN5 406 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 ODF2LQ9ULJ1 636 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 DIS3Q9Y2L1 958 aaKnown RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 ZBTB39O15060 712 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 TBX3O15119 743 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 PPP1R12BO60237 982 aaPredicted RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 EEF2P13639 858 aaKnown RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 HOXA13P31271 388 aaPredicted RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 PTGIRP43119 386 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 IFNAR2P48551 515 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 NFIAQ12857 509 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 SLFN13Q68D06 897 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 DNAJC18Q9H819 358 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 CHORDC1Q9UHD1 332 aaPredicted RBP17.71■□□□□ 0.43
SDC4-201ENST00000372733 ADAMTSL1Q8N6G6 1762 aa17.71■□□□□ 0.43
SDC4-201ENST00000372733 CCDC169A6NNP5 214 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 PHF2O75151 1096 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 FAM182BQ5T319 152 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 TTC27Q6P3X3 843 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 ZDHHC14Q8IZN3 488 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 PRELID2Q8N945 189 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 N4BP2L2Q92802 583 aaPredicted RBP17.7■□□□□ 0.42
SDC4-201ENST00000372733 RASAL2Q9UJF2 1139 aa17.7■□□□□ 0.42
SDC4-201ENST00000372733 GREB1LQ9C091 1923 aaPredicted RBP17.7■□□□□ 0.42
SDC4-201ENST00000372733 PPIP5K2O43314 1243 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms