RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 DKK3Q9UBP4 350 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 GMNCA6NCL1 334 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 CYP21A2P08686 494 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 XPAP23025 273 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-209ENST00000367257 FBLN1P23142 703 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 SLC1A1P43005 524 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 ITPRIPL1Q6GPH6 555 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 C4orf22Q6V702 233 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 C11orf57Q6ZUT1 292 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-209ENST00000367257 C8orf37Q96NL8 207 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 FTOQ9C0B1 505 aaKnown RBP eCLIP9.51□□□□□ -0.89
SYNE1-209ENST00000367257 ATP6V0A4Q9HBG4 840 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 TBC1D23Q9NUY8 699 aa9.51□□□□□ -0.89
SYNE1-209ENST00000367257 SMG5Q9UPR3 1016 aaKnown RBP9.51□□□□□ -0.89
SYNE1-209ENST00000367257 HAUS5O94927 633 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 MMEP08473 750 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 PLA2G4BP0C869 781 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 RAD23BP54727 409 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 GPC5P78333 572 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 MECOMQ03112 1051 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SESTD1Q86VW0 696 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 NLRP14Q86W24 1093 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 DNAAF3Q8N9W5 541 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 CLIC6Q96NY7 704 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 TRPM3Q9HCF6 1732 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-209ENST00000367257 GYG2O15488 501 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 PPIP5K2O43314 1243 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 PDE5AO76074 875 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 HSPA4LO95757 839 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 STAT4Q14765 748 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SPOPLQ6IQ16 392 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 TOGARAM2Q6ZUX3 1019 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 TRIM74Q86UV6 250 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 TRIM73Q86UV7 250 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 CDKL3Q8IVW4 592 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SMCR8Q8TEV9 937 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-209ENST00000367257 LRRC4Q9HBW1 653 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 FBXO40Q9UH90 709 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 POTEB3A0JP26 581 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 BMP3P12645 472 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 PLS3P13797 630 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 CCND1P24385 295 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 LRRC8BQ6P9F7 803 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 POTEBQ6S5H4 581 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SIKE1Q9BRV8 207 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SLC40A1Q9NP59 571 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 MCM8Q9UJA3 840 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 CHMP2BQ9UQN3 213 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SPAG6O75602 509 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 APOA4P06727 396 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 FAM200BP0CF97 657 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SERPINB3P29508 390 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 IFNAR2P48551 515 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 PPP2R5CQ13362 524 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 NECTIN1Q15223 517 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 KRT31Q15323 416 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SYDE2Q5VT97 1194 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SIX6OS1Q8N1H7 587 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 METTL13Q8N6R0 699 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 CMTM5Q96DZ9 223 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 COQ7Q99807 217 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 C2orf40Q9H1Z8 148 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 LZTS1Q9Y250 596 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 ADAMTS13Q76LX8 1427 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 ITIH6Q6UXX5 1313 aa9.5□□□□□ -0.89
SYNE1-209ENST00000367257 SFNP31947 248 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 PSMC1P62191 440 aaKnown RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 SNRPFP62306 86 aaKnown RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 C2orf54Q08AI8 447 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 KCNB1Q14721 858 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 ZNF827Q17R98 1081 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 SUPT20HL1Q3ZLR7 823 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 TBCKQ8TEA7 893 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 CCDC127Q96BQ5 260 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 OPTNQ96CV9 577 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 C10orf88Q9H8K7 445 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 TBC1D22BQ9NU19 505 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 GIMAP4Q9NUV9 329 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 ZFATQ9P243 1243 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 DBNLQ9UJU6 430 aaKnown RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 PLAAQ9Y263 795 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 MYO3BQ8WXR4 1341 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 SPDYE16A6NNV3 312 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 NVLO15381 856 aaKnown RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 MOCS3O95396 460 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 KRT8P05787 483 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 ATP6V1E1P36543 226 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 GTF2IP78347 998 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 DMPKQ09013 629 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 SPDYE2Q495Y8 402 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 RARS2Q5T160 578 aaKnown RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 KAZNQ674X7 775 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 RIBC1Q8N443 379 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 NR1H4Q96RI1 486 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 ABHD10Q9NUJ1 306 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 SUCLA2Q9P2R7 463 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-209ENST00000367257 ZFP69BQ9UJL9 534 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 MEIS1O00470 390 aa9.49□□□□□ -0.89
SYNE1-209ENST00000367257 SLC16A3O15427 465 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms