RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 SLC4A1P02730 911 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 FTLP02792 175 aaPredicted RBP15.83■□□□□ 0.12
CHD4-201ENST00000357008 PAPOLAP51003 745 aaKnown RBP15.83■□□□□ 0.12
CHD4-201ENST00000357008 CCNA1P78396 465 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 CCZ1BP86790 482 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 CCZ1P86791 482 aaPredicted RBP15.83■□□□□ 0.12
CHD4-201ENST00000357008 SCG3Q8WXD2 468 aaKnown RBP15.83■□□□□ 0.12
CHD4-201ENST00000357008 ING2Q9H160 280 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 TTC7AQ9ULT0 858 aaPredicted RBP15.83■□□□□ 0.12
CHD4-201ENST00000357008 METP08581 1390 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 RASSF10A6NK89 507 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 CYP2E1P05181 493 aaPredicted RBP15.83■□□□□ 0.12
CHD4-201ENST00000357008 BYSLQ13895 437 aaKnown RBP15.83■□□□□ 0.12
CHD4-201ENST00000357008 MORF4L2Q15014 288 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 LRRC14Q15048 493 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 C16orf87Q6PH81 154 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 STAG2Q8N3U4 1231 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 ENAHQ8N8S7 591 aaPredicted RBP15.83■□□□□ 0.12
CHD4-201ENST00000357008 TMEM47Q9BQJ4 181 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 UBN1Q9NPG3 1134 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 L3MBTL1Q9Y468 752 aa15.83■□□□□ 0.12
CHD4-201ENST00000357008 CFAP65Q6ZU64 1925 aaKnown RBP15.82■□□□□ 0.12
CHD4-201ENST00000357008 CCDC22O60826 627 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 APBA3O96018 575 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 MTF1Q14872 753 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 GOLGA8MH3BSY2 632 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 HSPA9P38646 679 aaKnown RBP15.82■□□□□ 0.12
CHD4-201ENST00000357008 ARHGDIAP52565 204 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 KCNB1Q14721 858 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 EPHA10Q5JZY3 1008 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 ATP11CQ8NB49 1132 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 RNF25Q96BH1 459 aaPredicted RBP15.82■□□□□ 0.12
CHD4-201ENST00000357008 STAMBPL1Q96FJ0 436 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 LRRC1Q9BTT6 524 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 VPS11Q9H270 941 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 SCHIP1Q9P0W5 487 aaPredicted RBP15.82■□□□□ 0.12
CHD4-201ENST00000357008 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.82■□□□□ 0.12
CHD4-201ENST00000357008 KITP10721 976 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 SOX5P35711 763 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 PRELPP51888 382 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 NAALADL2Q58DX5 795 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 PPM1NQ8N819 430 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 MCPH1Q8NEM0 835 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 C11orf70Q9BRQ4 267 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 LIMA1Q9UHB6 759 aaKnown RBP15.82■□□□□ 0.12
CHD4-201ENST00000357008 ICA1LQ8NDH6 482 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 SEL1LQ9UBV2 794 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 IGKV5-2P06315 115 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 SENP1Q9P0U3 644 aa15.82■□□□□ 0.12
CHD4-201ENST00000357008 KRT14P02533 472 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 MYBL1P10243 752 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 EIF2AK2P19525 551 aaKnown RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 INTS2Q9H0H0 1204 aaKnown RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 SNX5Q9Y5X3 404 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 SLC4A7Q9Y6M7 1214 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 PI4K2BG5E9Z4 385 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 GPS1Q13098 491 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 TMEM179Q6ZVK1 233 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 ANKRD7Q92527 254 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 KLHL8Q9P2G9 620 aaPredicted RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 SAMD9Q5K651 1589 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 HNRNPCL1O60812 293 aaKnown RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 ATP2C1P98194 919 aaPredicted RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 PDIA2Q13087 525 aaKnown RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 PADI6Q6TGC4 694 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 NUDCD3Q8IVD9 361 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 RHOT1Q8IXI2 618 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 RNF139Q8WU17 664 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 IP6K2Q9UHH9 426 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 A0A1B0GTH6 734 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 CFAP69A5D8W1 941 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 SMARCA1P28370 1054 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 PPARGP37231 505 aaPredicted RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 DPF2Q92785 391 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 ARL2BPQ9Y2Y0 163 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 ERBB3P21860 1342 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 PRDM15P57071 1507 aaPredicted RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 RNF103-CHMP3A0A140T963 221 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 FOXN1O15353 648 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 AGTP01019 485 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 KRT7P08729 469 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 SRGAP2CP0DJJ0 459 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 VAMP7P51809 220 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 STAT4Q14765 748 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 TMEM270Q6UE05 265 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 SPATA21Q7Z572 469 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 SGMS1Q86VZ5 419 aa15.81■□□□□ 0.12
CHD4-201ENST00000357008 GCOM2Q9BZD3 368 aaPredicted RBP15.81■□□□□ 0.12
CHD4-201ENST00000357008 USP17L5A8MUK1 530 aa15.8■□□□□ 0.12
CHD4-201ENST00000357008 FOXP2O15409 715 aa15.8■□□□□ 0.12
CHD4-201ENST00000357008 DPP9Q86TI2 863 aa15.8■□□□□ 0.12
CHD4-201ENST00000357008 METTL16Q86W50 562 aaKnown RBP15.8■□□□□ 0.12
CHD4-201ENST00000357008 SULF1Q8IWU6 871 aa15.8■□□□□ 0.12
CHD4-201ENST00000357008 ZBED8Q8IZ13 594 aa15.8■□□□□ 0.12
CHD4-201ENST00000357008 AMACRQ9UHK6 382 aa15.8■□□□□ 0.12
CHD4-201ENST00000357008 EIF3HO15372 352 aaKnown RBP eCLIP15.8■□□□□ 0.128e-7■■■□□ 17.7
CHD4-201ENST00000357008 E2F6O75461 281 aa15.8■□□□□ 0.12
CHD4-201ENST00000357008 LRIG3Q6UXM1 1119 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms