RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 CHST13Q8NET6 341 aa9.4□□□□□ -0.9
TRIM55-204ENST00000353317 NSUN6Q8TEA1 469 aaKnown RBP9.4□□□□□ -0.9
TRIM55-204ENST00000353317 ALS2CR12Q96Q35 445 aa9.4□□□□□ -0.9
TRIM55-204ENST00000353317 POLR3CQ9BUI4 534 aaPredicted RBP9.4□□□□□ -0.9
TRIM55-204ENST00000353317 RUSC1Q9BVN2 902 aa9.4□□□□□ -0.9
TRIM55-204ENST00000353317 CAPS2Q9BXY5 557 aa9.4□□□□□ -0.9
TRIM55-204ENST00000353317 BHMT2Q9H2M3 363 aa9.4□□□□□ -0.9
TRIM55-204ENST00000353317 EHMT1Q9H9B1 1298 aa9.4□□□□□ -0.9
TRIM55-204ENST00000353317 RBM12Q9NTZ6 932 aaKnown RBP9.4□□□□□ -0.9
TRIM55-204ENST00000353317 TBC1D7Q9P0N9 293 aa9.4□□□□□ -0.9
TRIM55-204ENST00000353317 PCDHA2Q9Y5H9 948 aa9.4□□□□□ -0.9
TRIM55-204ENST00000353317 MYH9P35579 1960 aaKnown RBP9.4□□□□□ -0.91
TRIM55-204ENST00000353317 PJA2O43164 708 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 BUB1O43683 1085 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 KCNA2P16389 499 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 EPHB4P54760 987 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 SETQ01105 290 aaPredicted RBP9.39□□□□□ -0.91
TRIM55-204ENST00000353317 CCDC181Q5TID7 509 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 KLHDC7AQ5VTJ3 777 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 TTC19Q6DKK2 380 aaPredicted RBP9.39□□□□□ -0.91
TRIM55-204ENST00000353317 NIPA1Q7RTP0 329 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 TRMT1LQ7Z2T5 733 aaKnown RBP9.39□□□□□ -0.91
TRIM55-204ENST00000353317 EFCAB13Q8IY85 973 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 FAM133AQ8N9E0 248 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 RUBCNQ92622 972 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 ARL8AQ96BM9 186 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 MS4A14Q96JA4 679 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 RIT2Q99578 217 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 PLXNA1Q9UIW2 1896 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 CEP350Q5VT06 3117 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 SFI1A8K8P3 1242 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 GOLGA8KD6RF30 607 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 EIF3HO15372 352 aaKnown RBP eCLIP9.39□□□□□ -0.91
TRIM55-204ENST00000353317 ALDH5A1P51649 535 aaPredicted RBP9.39□□□□□ -0.91
TRIM55-204ENST00000353317 CASP5P51878 434 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 ERVK-9P63128 1117 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 GIT2Q14161 759 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 TTMPQ5BVD1 217 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 HGSNATQ68CP4 663 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 EMBQ6PCB8 327 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 LRRC55Q6ZSA7 311 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 UNC13DQ70J99 1090 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 EEPD1Q7L9B9 569 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 GPBP1Q86WP2 473 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 C2orf69Q8N8R5 385 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 SYT2Q8N9I0 419 aaPredicted RBP9.39□□□□□ -0.91
TRIM55-204ENST00000353317 BCAS4Q8TDM0 211 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 TEKT3Q9BXF9 490 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 NT5C3AQ9H0P0 336 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 KDM3AQ9Y4C1 1321 aa9.39□□□□□ -0.91
TRIM55-204ENST00000353317 ECM2O94769 699 aaPredicted RBP9.38□□□□□ -0.91
TRIM55-204ENST00000353317 PAFAH1B1P43034 410 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 HUNKP57058 714 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 GNGT1P63211 74 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 KCNMA1Q12791 1236 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 COASYQ13057 564 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 CHADLQ6NUI6 762 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 C8orf74Q6P047 294 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 TADA2BQ86TJ2 420 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 GUF1Q8N442 669 aaKnown RBP9.38□□□□□ -0.91
TRIM55-204ENST00000353317 CAVIN3Q969G5 261 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 ZIC5Q96T25 663 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 REEP2Q9BRK0 252 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 LXNQ9BS40 222 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 IKZF4Q9H2S9 585 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 PNMA2Q9UL42 364 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 RABGAP1Q9Y3P9 1069 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 PLXNB2O15031 1838 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 DNAJC25-GNG10A0A024R161 153 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 PVALEFA0A1B0GWK0 134 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 ZSCAN5CA6NGD5 496 aaPredicted RBP9.38□□□□□ -0.91
TRIM55-204ENST00000353317 KRT14P02533 472 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 GLI1P08151 1106 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 EPB41P11171 864 aaKnown RBP9.38□□□□□ -0.91
TRIM55-204ENST00000353317 CCND2P30279 289 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 LRRC63Q05C16 580 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 EPHA7Q15375 998 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 RINT1Q6NUQ1 792 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 PDXDC1Q6P996 788 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 GBP6Q6ZN66 633 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 CACNA2D4Q7Z3S7 1137 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 ZIM3Q96PE6 472 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 DNM3Q9UQ16 869 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 MYH10P35580 1976 aa9.38□□□□□ -0.91
TRIM55-204ENST00000353317 A0A087WUV0 522 aaPredicted RBP9.37□□□□□ -0.91
TRIM55-204ENST00000353317 SSU72P8A0A1W2PR75 194 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 ESYT3A0FGR9 886 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 IGF2BP3O00425 579 aaKnown RBP eCLIP9.37□□□□□ -0.91
TRIM55-204ENST00000353317 EBAG9O00559 213 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 OPA1O60313 960 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 TLR2O60603 784 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 CPP00450 1065 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 CETPP11597 493 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 EDNRBP24530 442 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 TNFRSF8P28908 595 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 HOXD13P35453 343 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 FKBP1BP68106 108 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 SP4Q02446 784 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 ALS2CLQ60I27 953 aa9.37□□□□□ -0.91
TRIM55-204ENST00000353317 C1orf186Q6ZWK4 172 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms