RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 DAGLBQ8NCG7 672 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 CPA5Q8WXQ8 436 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 WDR11Q9BZH6 1224 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 TYW1Q9NV66 732 aaKnown RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 INTS9Q9NV88 658 aaKnown RBP12.89□□□□□ -0.35
USP1-201ENST00000339950 SAMD15Q9P1V8 674 aa12.89□□□□□ -0.35
USP1-201ENST00000339950 ZNF233A6NK53 670 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 F5H423 210 aaPredicted RBP12.88□□□□□ -0.35
USP1-201ENST00000339950 CLDN3O15551 220 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 NOL4O94818 638 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 POLD1P28340 1107 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 TTLL12Q14166 644 aaPredicted RBP12.88□□□□□ -0.35
USP1-201ENST00000339950 LONRF1Q17RB8 773 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 ARHGEF16Q5VV41 709 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 CC2D2BQ6DHV5 1058 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 TMEM179Q6ZVK1 233 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 TTC16Q8NEE8 873 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 FAM213AQ9BRX8 229 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 EHMT1Q9H9B1 1298 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 SEPT9Q9UHD8 586 aaPredicted RBP12.88□□□□□ -0.35
USP1-201ENST00000339950 MYH13Q9UKX3 1938 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 DDX3XO00571 662 aaKnown RBP eCLIP12.88□□□□□ -0.354e-11■■■■■ 43.8
USP1-201ENST00000339950 PROM2Q8N271 834 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 ATP6V1G3Q96LB4 118 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 CEP63Q96MT8 703 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.88□□□□□ -0.355e-6■■■□□ 16.3
USP1-201ENST00000339950 TTYH3Q9C0H2 523 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 PPP1R37O75864 691 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 FGRP09769 529 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 GCKP35557 465 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 FMO5P49326 533 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 ACOT2P49753 483 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 LDHDQ86WU2 507 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 SYCE1Q8N0S2 351 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 MMGT1Q8N4V1 131 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 RBM46Q8TBY0 533 aaKnown RBP12.88□□□□□ -0.35
USP1-201ENST00000339950 KRT35Q92764 455 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 C9orf72Q96LT7 481 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 C11orf70Q9BRQ4 267 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 UBXN6Q9BZV1 441 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 VIPAS39Q9H9C1 493 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 CD248Q9HCU0 757 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 ALG13Q9NP73 1137 aaKnown RBP12.88□□□□□ -0.35
USP1-201ENST00000339950 ANAPC7Q9UJX3 599 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 MYO3BQ8WXR4 1341 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 TULP2O00295 520 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 PEX10O60683 326 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 KRT15P19012 456 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 KRT27Q7Z3Y8 459 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 TPCN2Q8NHX9 752 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 FBXO25Q8TCJ0 367 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 NACC1Q96RE7 527 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 VPS37BQ9H9H4 285 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 ALG6Q9Y672 507 aa12.88□□□□□ -0.35
USP1-201ENST00000339950 CORO7P57737 925 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 SGO2Q562F6 1265 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 ALS2CLQ60I27 953 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 HGSNATQ68CP4 663 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 CHURC1Q8WUH1 139 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 N4BP2L2Q92802 583 aaPredicted RBP12.87□□□□□ -0.35
USP1-201ENST00000339950 PCNTO95613 3336 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 A0A1B0GUA9 196 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 SSU72P8A0A1W2PR75 194 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 NFIBO00712 420 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 GKAP1Q5VSY0 366 aaPredicted RBP12.87□□□□□ -0.35
USP1-201ENST00000339950 CBWD2Q8IUF1 395 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 NLGN1Q8N2Q7 840 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 RNF10Q8N5U6 811 aaKnown RBP12.87□□□□□ -0.35
USP1-201ENST00000339950 ZNF473Q8WTR7 871 aaKnown RBP12.87□□□□□ -0.35
USP1-201ENST00000339950 CNKSR1Q969H4 720 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 PAGR1Q9BTK6 254 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 NEUROG2Q9H2A3 272 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 THAP12O43422 761 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 MMEP08473 750 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 SOX5P35711 763 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 SMTNP53814 917 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 SLC29A2Q14542 456 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 CEP55Q53EZ4 464 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 DCUN1D2Q6PH85 259 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 EP400NLQ6ZTU2 488 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 NLRX1Q86UT6 975 aa12.87□□□□□ -0.35
USP1-201ENST00000339950 AENQ8WTP8 325 aaKnown RBP12.87□□□□□ -0.35
USP1-201ENST00000339950 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.87□□□□□ -0.35
USP1-201ENST00000339950 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.87□□□□□ -0.35
USP1-201ENST00000339950 MEIS2O14770 477 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 CAND2O75155 1236 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 SGPL1O95470 568 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 RPA1P27694 616 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 MAPK4P31152 587 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 MMS22LQ6ZRQ5 1243 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 PPP1R12CQ9BZL4 782 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 CNTNAP4Q9C0A0 1308 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 SCN11AQ9UI33 1791 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 FOSP01100 380 aaPredicted RBP12.86□□□□□ -0.35
USP1-201ENST00000339950 LMNB1P20700 586 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 COMTP21964 271 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 IGBP1P78318 339 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 SPP2Q13103 211 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 C10orf76Q5T2E6 689 aa12.86□□□□□ -0.35
USP1-201ENST00000339950 COL23A1Q86Y22 540 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms