RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TTLL6Q8N841 843 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 ENOX1Q8TC92 643 aaKnown RBP13.46□□□□□ -0.25
SDC3-201ENST00000336798 E9PMD0 336 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 PRPF3O43395 683 aaKnown RBP13.46□□□□□ -0.25
SDC3-201ENST00000336798 CCNE1P24864 410 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 NNMTP40261 264 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 RASGRF1Q13972 1273 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 SLFN12LQ6IEE8 588 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 SWSAP1Q6NVH7 229 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 PITPNM3Q9BZ71 974 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 DCTN4Q9UJW0 460 aa13.46□□□□□ -0.25
SDC3-201ENST00000336798 HMGB1P1B2RPK0 211 aaPredicted RBP13.46□□□□□ -0.26
SDC3-201ENST00000336798 SNAP23O00161 211 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 MCF2P10911 925 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 LTKP29376 864 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 COPS2P61201 443 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 PSMC1P62191 440 aaKnown RBP13.46□□□□□ -0.26
SDC3-201ENST00000336798 TERF2Q15554 542 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 DDIASQ8IXT1 998 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 ING2Q9H160 280 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 ABCB6Q9NP58 842 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 COPRSQ9NQ92 184 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 ATG3Q9NT62 314 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 ADA2Q9NZK5 511 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 MAPK13O15264 365 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 DIAPH2O60879 1101 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 ATP1A3P13637 1013 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 UBE3AQ05086 875 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 KRT31Q15323 416 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 ZC3H18Q86VM9 953 aaKnown RBP13.46□□□□□ -0.26
SDC3-201ENST00000336798 TDRD7Q8NHU6 1098 aaKnown RBP13.46□□□□□ -0.26
SDC3-201ENST00000336798 OTUD5Q96G74 571 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 TRIM55Q9BYV6 548 aa13.46□□□□□ -0.26
SDC3-201ENST00000336798 CDC25BP30305 580 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 MAPK6Q16659 721 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 FAM217BQ9NTX9 383 aaPredicted RBP13.45□□□□□ -0.26
SDC3-201ENST00000336798 RASA4BC9J798 803 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 RASA4O43374 803 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 MYOM2P54296 1465 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 GUCY2CP25092 1073 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 NFKBIAP25963 317 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 SOX11P35716 441 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 PSMC5P62195 406 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 SRRM1Q8IYB3 904 aaKnown RBP13.45□□□□□ -0.26
SDC3-201ENST00000336798 CYP4F11Q9HBI6 524 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 USP17L10C9JJH3 530 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 CD2BP2O95400 341 aaKnown RBP13.45□□□□□ -0.26
SDC3-201ENST00000336798 MYBP10242 640 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 ZBED6P86452 979 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 ANKRD40Q6AI12 368 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 BZW1Q7L1Q6 419 aaKnown RBP13.45□□□□□ -0.26
SDC3-201ENST00000336798 PPM1NQ8N819 430 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 ABHD8Q96I13 439 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 ZNF302Q9NR11 478 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 STRIP2Q9ULQ0 834 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 SRPRBQ9Y5M8 271 aaKnown RBP13.45□□□□□ -0.26
SDC3-201ENST00000336798 CCDC78A2IDD5 438 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 GNAT1P11488 350 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 TOGARAM2Q6ZUX3 1019 aa13.45□□□□□ -0.26
SDC3-201ENST00000336798 APOBEC2Q9Y235 224 aaKnown RBP13.45□□□□□ -0.26
SDC3-201ENST00000336798 hCG_2014768A0A024R1R8 64 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 NCK2O43639 380 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 ARL4CP56559 192 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 GRAPQ13588 217 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 B4GALNT2Q8NHY0 566 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 TTC8Q8TAM2 541 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 GRAPLQ8TC17 118 aaPredicted RBP13.44□□□□□ -0.26
SDC3-201ENST00000336798 ADAM33Q9BZ11 813 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 ASNSD1Q9NWL6 643 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 GYG2O15488 501 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 ASMTLO95671 621 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 ACAD11Q709F0 780 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 PPHLN1Q8NEY8 458 aaKnown RBP13.44□□□□□ -0.26
SDC3-201ENST00000336798 BEST2Q8NFU1 509 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 MMP19Q99542 508 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 MID2Q9UJV3 735 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 PHKA2P46019 1235 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 PADI6Q6TGC4 694 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 OR6P1Q8NGX9 317 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 RMDN1Q96DB5 314 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 NAF1Q96HR8 494 aaKnown RBP13.44□□□□□ -0.26
SDC3-201ENST00000336798 HMBSP08397 361 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 MMEP08473 750 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 PRELPP51888 382 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 LMBRD2Q68DH5 695 aaPredicted RBP13.44□□□□□ -0.26
SDC3-201ENST00000336798 SLC44A5Q8NCS7 719 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 NUP85Q9BW27 656 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 YY1AP1Q9H869 796 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 KLHL11Q9NVR0 708 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 NUP153P49790 1475 aaKnown RBP13.44□□□□□ -0.26
SDC3-201ENST00000336798 DYTNA2CJ06 578 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 PDHA1P08559 390 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 IRX1P78414 480 aaPredicted RBP13.44□□□□□ -0.26
SDC3-201ENST00000336798 ARID5BQ14865 1188 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 MDH1BQ5I0G3 518 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 GLYCTKQ8IVS8 523 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 YAF2Q8IY57 180 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 ARL8AQ96BM9 186 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 GABBR1Q9UBS5 961 aa13.44□□□□□ -0.26
SDC3-201ENST00000336798 ATP9BO43861 1147 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms