RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PBX1P40424 430 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 COPB1P53618 953 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 HTRA3P83110 453 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 ZC2HC1CQ53FD0 456 aaPredicted RBP16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 MAEAQ7L5Y9 396 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 HS2ST1Q7LGA3 356 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 NAP1L5Q96NT1 182 aaPredicted RBP16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 MKNK1Q9BUB5 465 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 AP5M1Q9H0R1 490 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 RNPEPQ9H4A4 650 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 RTN4Q9NQC3 1192 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 KMT5AQ9NQR1 393 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 AGPAT3Q9NRZ7 376 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 DMAC2Q9NW81 257 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 ADGRA3Q8IWK6 1321 aa16.41■□□□□ 0.22
CCDC88C-202ENST00000334448 RRN3P2A6NIE6 340 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 LGALS16A8MUM7 142 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 CETN3O15182 167 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 ECM2O94769 699 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 PIGRP01833 764 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 NR3C1P04150 777 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 ZNF286BP0CG31 522 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 PRKCSHP14314 528 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 INSRRP14616 1297 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 NR2F2P24468 414 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 MCCD1P59942 119 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 POU5F1BQ06416 359 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 KCNA1Q09470 495 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 MKRN4PQ13434 485 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 MXD4Q14582 209 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 FILIP1LQ4L180 1135 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 CDCA2Q69YH5 1023 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 TRMT1LQ7Z2T5 733 aaKnown RBP16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 VSTM4Q8IW00 320 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 ASAP3Q8TDY4 903 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 KAT2BQ92831 832 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 IMPACTQ9P2X3 320 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 TBX20Q9UMR3 447 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 EXOC7Q9UPT5 735 aa16.4■□□□□ 0.22
CCDC88C-202ENST00000334448 GOLGA6L6A8MZA4 724 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 SLC16A4O15374 487 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 ASAP2O43150 1006 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 CST5P28325 142 aaPredicted RBP16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 HOXC8P31273 242 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 SOX10P56693 466 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 MAP2K1Q02750 393 aaPredicted RBP16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 CACNB2Q08289 660 aaPredicted RBP16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 FSCN1Q16658 493 aaKnown RBP16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 HSP90AA4PQ58FG1 418 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 FRMD5Q7Z6J6 570 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 IFNLR1Q8IU57 520 aaPredicted RBP16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 RETREG2Q8NC44 543 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 PSPC1Q8WXF1 523 aaKnown RBP16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 TMEM143Q96AN5 459 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 KATNAL1Q9BW62 490 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 NFKBIZQ9BYH8 718 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 TMEM134Q9H6X4 195 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 ITIH6Q6UXX5 1313 aa16.39■□□□□ 0.21
CCDC88C-202ENST00000334448 A0A1W2PQC6 194 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 DENND3A2RUS2 1198 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 MAPK13O15264 365 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 ADCY3O60266 1144 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 HSPA6P17066 643 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 EFNA5P52803 228 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 PPP2R3AQ06190 1150 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 PPFIA1Q13136 1202 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 ADAM9Q13443 819 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 CAPSQ13938 189 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 MAN2A1Q16706 1144 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 TAS1R3Q7RTX0 852 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 TRIM59Q8IWR1 403 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 SLAIN1Q8ND83 568 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 ZNF296Q8WUU4 475 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 LENG1Q96BZ8 264 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 TUBGCP2Q9BSJ2 902 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 METTL14Q9HCE5 456 aaKnown RBP16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 NRCAMQ92823 1304 aa16.38■□□□□ 0.21
CCDC88C-202ENST00000334448 MBLAC1A4D2B0 266 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 CCDC169A6NNP5 214 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 ADAMTS4O75173 837 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 RARBP10826 455 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 PRKAR2AP13861 404 aaKnown RBP16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 ADAM17P78536 824 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 LAMTOR4Q0VGL1 99 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 DRP2Q13474 957 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 GRIK4Q16099 956 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 MIIPQ5JXC2 388 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 PRPF31Q8WWY3 499 aaKnown RBP16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 BORCS6Q96GS4 357 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 C2orf40Q9H1Z8 148 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 TAB2Q9NYJ8 693 aa16.37■□□□□ 0.21
CCDC88C-202ENST00000334448 N4BP3O15049 544 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 TPM2P07951 284 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 MTIF2P46199 727 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 PSEN2P49810 448 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 DNM2P50570 870 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 GSDMDP57764 484 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 PURAQ00577 322 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 ENPEPQ07075 957 aa16.36■□□□□ 0.21
CCDC88C-202ENST00000334448 TRIM32Q13049 653 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms