RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 AXDND1Q5T1B0 1012 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 RRAGBQ5VZM2 374 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 RINT1Q6NUQ1 792 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 SYT2Q8N9I0 419 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 RAD54LQ92698 747 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 SLC9A7Q96T83 725 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 PANK2Q9BZ23 570 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 IFT122Q9HBG6 1241 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 BLOC1S4Q9NUP1 217 aa17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 CIZ1Q9ULV3 898 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 RBM19Q9Y4C8 960 aaKnown RBP17.63■□□□□ 0.41
CCDC28A-201ENST00000332797 SOX1O00570 391 aaPredicted RBP17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 AMHP03971 560 aa17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 SFPQP23246 707 aaKnown RBP eCLIP17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 RAD51AP2Q09MP3 1159 aa17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 MCM6Q14566 821 aa17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 SHC4Q6S5L8 630 aa17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 C1orf186Q6ZWK4 172 aa17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 LARP4BQ92615 738 aaKnown RBP17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 FTHL17Q9BXU8 183 aa17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 INO80BQ9C086 356 aaPredicted RBP17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 TMX1Q9H3N1 280 aa17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 LAMA2P24043 3122 aaKnown RBP17.62■□□□□ 0.41
CCDC28A-201ENST00000332797 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 LRRIQ4A6NIV6 560 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 HIP1RO75146 1068 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 CCDC73Q6ZRK6 1079 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 TMCO2Q7Z6W1 182 aaPredicted RBP17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 GPBP1Q86WP2 473 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 MYOCDQ8IZQ8 938 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 PDILTQ8N807 584 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 LINC01599Q8WXQ3 324 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 BSNDQ8WZ55 320 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 KIFAP3Q92845 792 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 SCAND2PQ9GZW5 306 aaPredicted RBP17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 STK17AQ9UEE5 414 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 PTPRSQ13332 1948 aa17.61■□□□□ 0.41
CCDC28A-201ENST00000332797 A0A087X0B3 334 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 DENND3A2RUS2 1198 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 MGEA5O60502 916 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 GUCY2CP25092 1073 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 STAT6P42226 847 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 PTENP60484 403 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 CATSPER4Q7RTX7 472 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 SRGAP1Q7Z6B7 1085 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 PHOSPHO2Q8TCD6 241 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 IFT74Q96LB3 600 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 MINDY3Q9H8M7 445 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 GDPD2Q9HCC8 539 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 KCND2Q9NZV8 630 aa17.6■□□□□ 0.41
CCDC28A-201ENST00000332797 NPHP3-ACAD11A0A0J9YXS1 232 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 ENPP3O14638 875 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 IBSPP21815 317 aaPredicted RBP17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 RABGGTBP53611 331 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 SMAD3P84022 425 aaKnown RBP17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 PPP2R5AQ15172 486 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 RESP18Q5W5W9 173 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 FAM117BQ6P1L5 589 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 RTN4RL1Q86UN2 441 aaPredicted RBP17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 HERC6Q8IVU3 1022 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 LRCH3Q96II8 777 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 DRC1Q96MC2 740 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 ADAM2Q99965 735 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 TIPINQ9BVW5 301 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 TSPYL2Q9H2G4 693 aaPredicted RBP17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 FAM13BQ9NYF5 915 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 LAMA3Q16787 3333 aa17.59■□□□□ 0.41
CCDC28A-201ENST00000332797 TCHHQ07283 1943 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 INO80B-WBP1J3KQ70 363 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 UPP2O95045 317 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 KRT18P05783 430 aaKnown RBP17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 CACNB1Q02641 598 aaPredicted RBP17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 POU5F1BQ06416 359 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 MAPK7Q13164 816 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 TPRNQ4KMQ1 711 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 NAALADL2Q58DX5 795 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 ARSHQ5FYA8 562 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 ZBTB8OSQ8IWT0 167 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 DAW1Q8N136 415 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 DEPTORQ8TB45 409 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 ZBED2Q9BTP6 218 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 CHMP5Q9NZZ3 219 aa17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 PIN4Q9Y237 131 aaKnown RBP17.58■□□□□ 0.41
CCDC28A-201ENST00000332797 ZSCAN20P17040 1043 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 PBX2P40425 430 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 NAMPTP43490 491 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 MBTD1Q05BQ5 628 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 DSC3Q14574 896 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 SV2BQ7L1I2 683 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 IFNLR1Q8IU57 520 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 DHX58Q96C10 678 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 REEP2Q9BRK0 252 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 KIFC3Q9BVG8 833 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 NFKBIZQ9BYH8 718 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 PBX4Q9BYU1 374 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 GBF1Q92538 1859 aa17.57■□□□□ 0.4
CCDC28A-201ENST00000332797 SFI1A8K8P3 1242 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms