RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 PDLIM7Q9NR12 457 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 PPME1Q9Y570 386 aa11.04□□□□□ -0.64
HMGB3-201ENST00000325307 MYADML2A6NDP7 307 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 LRRIQ4A6NIV6 560 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 MYCP01106 439 aaPredicted RBP11.03□□□□□ -0.64
HMGB3-201ENST00000325307 NPTX2P47972 431 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 DNM2P50570 870 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 MFSD10Q14728 455 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 HAUS6Q7Z4H7 955 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 RETREG2Q8NC44 543 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 BSNDQ8WZ55 320 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 CASP8AP2Q9UKL3 1982 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 ZBTB42B2RXF5 422 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 ZEB2O60315 1214 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 KLRC1P26715 233 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 KCNA1Q09470 495 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 KNOP1Q1ED39 458 aaKnown RBP11.03□□□□□ -0.64
HMGB3-201ENST00000325307 EFCAB12Q6NXP0 572 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 TTI2Q6NXR4 508 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 DEPTORQ8TB45 409 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 TCP11Q8WWU5 503 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 ZNF592Q92610 1267 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 C17orf75Q9HAS0 396 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 CENPFP49454 3210 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 EIF3DO15371 548 aaKnown RBP eCLIP11.03□□□□□ -0.64
HMGB3-201ENST00000325307 GTF2F1P35269 517 aaKnown RBP eCLIP11.03□□□□□ -0.64
HMGB3-201ENST00000325307 GJA9P57773 515 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 GRIK4Q16099 956 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 CENPPQ6IPU0 288 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 SLC17A8Q8NDX2 589 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 SH3TC2Q8TF17 1288 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 PSPC1Q8WXF1 523 aaKnown RBP11.03□□□□□ -0.64
HMGB3-201ENST00000325307 CEP89Q96ST8 783 aa11.03□□□□□ -0.64
HMGB3-201ENST00000325307 MAGEC2Q9UBF1 373 aaPredicted RBP11.03□□□□□ -0.64
HMGB3-201ENST00000325307 CLSTN1O94985 981 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 F2P00734 622 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 PSEN2P49810 448 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 CLCN3P51790 818 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 LRRC63Q05C16 580 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 DRP2Q13474 957 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 PPP2R5AQ15172 486 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 EPM2AIP1Q7L775 607 aaPredicted RBP11.02□□□□□ -0.64
HMGB3-201ENST00000325307 ANKRD20A12PQ8NF67 263 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 ASAP3Q8TDY4 903 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 PRPF31Q8WWY3 499 aaKnown RBP11.02□□□□□ -0.64
HMGB3-201ENST00000325307 FIZ1Q96SL8 496 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 KATNAL1Q9BW62 490 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 HMX1Q9NP08 348 aaPredicted RBP11.02□□□□□ -0.64
HMGB3-201ENST00000325307 SETD4Q9NVD3 440 aa11.02□□□□□ -0.64
HMGB3-201ENST00000325307 DDX20Q9UHI6 824 aaKnown RBP11.02□□□□□ -0.64
HMGB3-201ENST00000325307 UQCRHLA0A096LP55 91 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 DENND3A2RUS2 1198 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 GAS2O43903 313 aaKnown RBP11.02□□□□□ -0.65
HMGB3-201ENST00000325307 UQCRHP07919 91 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 SRGAP2CP0DJJ0 459 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 CDC25BP30305 580 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 ALCAMQ13740 583 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 IER5Q5VY09 327 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 CXCL17Q6UXB2 119 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 HS2ST1Q7LGA3 356 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.02□□□□□ -0.65
HMGB3-201ENST00000325307 ZNF507Q8TCN5 953 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 KAT2BQ92831 832 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 DUSP9Q99956 384 aaKnown RBP11.02□□□□□ -0.65
HMGB3-201ENST00000325307 SUCLA2Q9P2R7 463 aaPredicted RBP11.02□□□□□ -0.65
HMGB3-201ENST00000325307 MAGEB2O15479 319 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 SMIM10L2AP0DMW4 78 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 SMIM10L2BP0DMW5 78 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 GLRA2P23416 452 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 TMOD1P28289 359 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 PURAQ00577 322 aaKnown RBP11.02□□□□□ -0.65
HMGB3-201ENST00000325307 FANCCQ00597 558 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 MAP3K21Q5TCX8 1036 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 RHPN2Q8IUC4 686 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 VTI1AQ96AJ9 217 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 ZNF668Q96K58 619 aaPredicted RBP11.02□□□□□ -0.65
HMGB3-201ENST00000325307 ACCSQ96QU6 501 aa11.02□□□□□ -0.65
HMGB3-201ENST00000325307 MYH11P35749 1972 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 CALUO43852 315 aaPredicted RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 KPNA6O60684 536 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 C22orf31O95567 290 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 FGFR1OPO95684 399 aaKnown RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 MAPTP10636 758 aaKnown RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 ARL2P36404 184 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 RTP1P59025 263 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 LRMPQ12912 555 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 C7orf31Q8N865 590 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 SPIRE2Q8WWL2 714 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 NLRP4Q96MN2 994 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 SCLT1Q96NL6 688 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 PPP1R16BQ96T49 567 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 ARID3AQ99856 593 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 MTG1Q9BT17 334 aaPredicted RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 IFNKQ9P0W0 207 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 AKT3Q9Y243 479 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 RRN3P2A6NIE6 340 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 PES1O00541 588 aaKnown RBP11.01□□□□□ -0.65
HMGB3-201ENST00000325307 NCKAP1LP55160 1127 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 DRC7Q8IY82 874 aa11.01□□□□□ -0.65
HMGB3-201ENST00000325307 DNAJC5GQ8N7S2 189 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms