RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PTPROQ16827 1216 aa18.2■□□□□ 0.5
LSM1-201ENST00000311351 FAM43BQ6ZT52 329 aaPredicted RBP18.2■□□□□ 0.5
LSM1-201ENST00000311351 RNF169Q8NCN4 708 aa18.2■□□□□ 0.5
LSM1-201ENST00000311351 PIGOQ8TEQ8 1089 aa18.2■□□□□ 0.5
LSM1-201ENST00000311351 PRPF31Q8WWY3 499 aaKnown RBP18.2■□□□□ 0.5
LSM1-201ENST00000311351 PSPC1Q8WXF1 523 aaKnown RBP18.2■□□□□ 0.5
LSM1-201ENST00000311351 MTRQ99707 1265 aa18.2■□□□□ 0.5
LSM1-201ENST00000311351 NOL7Q9UMY1 257 aaKnown RBP18.2■□□□□ 0.5
LSM1-201ENST00000311351 NCOR1O75376 2440 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 MED24O75448 989 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 SPATA31C1P0DKV0 1188 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 TECP42680 631 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 TRAPPC10P48553 1259 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 TOB1P50616 345 aaPredicted RBP18.19■□□□□ 0.5
LSM1-201ENST00000311351 KCNQ1P51787 676 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 CDC42EP1Q00587 391 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 LAMTOR4Q0VGL1 99 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 ORC2Q13416 577 aaPredicted RBP18.19■□□□□ 0.5
LSM1-201ENST00000311351 TIGD5Q53EQ6 642 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 ECHDC2Q86YB7 292 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 ELAC1Q9H777 363 aaKnown RBP18.19■□□□□ 0.5
LSM1-201ENST00000311351 IFT122Q9HBG6 1241 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 ALG13Q9NP73 1137 aaKnown RBP18.19■□□□□ 0.5
LSM1-201ENST00000311351 PIN4Q9Y237 131 aaKnown RBP18.19■□□□□ 0.5
LSM1-201ENST00000311351 KIF3AQ9Y496 699 aa18.19■□□□□ 0.5
LSM1-201ENST00000311351 ATF7P17544 494 aaPredicted RBP18.18■□□□□ 0.5
LSM1-201ENST00000311351 RARRES1P49788 294 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 TCEAL5Q5H9L2 206 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 SPOUT1Q5T280 376 aaKnown RBP18.18■□□□□ 0.5
LSM1-201ENST00000311351 MCTP1Q6DN14 999 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 POTEGQ6S5H5 508 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 CATSPER4Q7RTX7 472 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 HLA-CQ95604 372 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 CCDC43Q96MW1 224 aaKnown RBP18.18■□□□□ 0.5
LSM1-201ENST00000311351 PLVAPQ9BX97 442 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 MINDY3Q9H8M7 445 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 ANKEF1Q9NU02 776 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 COG5Q9UP83 839 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 PCDHB6Q9Y5E3 794 aa18.18■□□□□ 0.5
LSM1-201ENST00000311351 GAS2O43903 313 aaKnown RBP18.17■□□□□ 0.5
LSM1-201ENST00000311351 USO1O60763 962 aaKnown RBP18.17■□□□□ 0.5
LSM1-201ENST00000311351 ITGB1P05556 798 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 SRGAP2CP0DJJ0 459 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 DNAJB1P25685 340 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 MCM2P49736 904 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 CLLU1OSQ5K130 101 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 FERMT3Q86UX7 667 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 CATSPER3Q86XQ3 398 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 EXOC8Q8IYI6 725 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 C4orf32Q8N8J7 132 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 KLHL23Q8NBE8 558 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 RNF149Q8NC42 400 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 ASAP3Q8TDY4 903 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 TCP11Q8WWU5 503 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 P2RX5Q93086 422 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 CASD1Q96PB1 797 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 INO80BQ9C086 356 aaPredicted RBP18.17■□□□□ 0.5
LSM1-201ENST00000311351 TMEM117Q9H0C3 514 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 NSUN3Q9H649 340 aaKnown RBP18.17■□□□□ 0.5
LSM1-201ENST00000311351 TUFT1Q9NNX1 390 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 TYW1Q9NV66 732 aaKnown RBP18.17■□□□□ 0.5
LSM1-201ENST00000311351 DACT1Q9NYF0 836 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 PLAGL2Q9UPG8 496 aa18.17■□□□□ 0.5
LSM1-201ENST00000311351 A0A0U1RQF3 1178 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 CAMK1Q14012 370 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 LONRF3Q496Y0 759 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 TWF2Q6IBS0 349 aaKnown RBP18.16■□□□□ 0.5
LSM1-201ENST00000311351 ZNF598Q86UK7 904 aaKnown RBP18.16■□□□□ 0.5
LSM1-201ENST00000311351 IL27Q8NEV9 243 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 ADAMTS19Q8TE59 1207 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 SYMPKQ92797 1274 aaKnown RBP18.16■□□□□ 0.5
LSM1-201ENST00000311351 BACH2Q9BYV9 841 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 LMAN2LQ9H0V9 348 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 CWH43Q9H720 699 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 UBE2ZQ9H832 354 aaPredicted RBP18.16■□□□□ 0.5
LSM1-201ENST00000311351 AGPAT5Q9NUQ2 364 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 SMC3Q9UQE7 1217 aa18.16■□□□□ 0.5
LSM1-201ENST00000311351 HOXA2O43364 376 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 DGAT1O75907 488 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 PHKA2P46019 1235 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 PTGDRQ13258 359 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 CAPSQ13938 189 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 AAK1Q2M2I8 961 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 LRRC55Q6ZSA7 311 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 SRGAP1Q7Z6B7 1085 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 ABI1Q8IZP0 508 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 COLGALT1Q8NBJ5 622 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 ERMNQ8TAM6 284 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 SPPL3Q8TCT6 385 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 HELQQ8TDG4 1101 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 LPPQ93052 612 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 POLR3CQ9BUI4 534 aaPredicted RBP18.15■□□□□ 0.5
LSM1-201ENST00000311351 POLR3FQ9H1D9 316 aaPredicted RBP18.15■□□□□ 0.5
LSM1-201ENST00000311351 GPRC5CQ9NQ84 441 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 CHST12Q9NRB3 414 aa18.15■□□□□ 0.5
LSM1-201ENST00000311351 MEIS3P2A8K0S8 358 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 H3BQV1 296 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 IRS1P35568 1242 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 PBX3P40426 434 aa18.14■□□□□ 0.49
LSM1-201ENST00000311351 FXR2P51116 673 aaKnown RBP eCLIP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms