RNA–Protein interactions for RNA: ENST00000293880.9

SSRP1-202, Transcript of structure specific recognition protein 1, humanhuman

TSL 2

Gene SSRP1, Length 6,296 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-202ENST00000293880 CUL3Q13618 768 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 SLC9A5Q14940 896 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 CYTH1Q15438 398 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 DHX40Q8IX18 779 aaKnown RBP17.2■□□□□ 0.34
SSRP1-202ENST00000293880 ZBED8Q8IZ13 594 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 ARHGAP26Q9UNA1 814 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 FOSP01100 380 aaPredicted RBP17.2■□□□□ 0.34
SSRP1-202ENST00000293880 GCLMP48507 274 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 TBCCQ15814 346 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 THNSL1Q8IYQ7 743 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 C1orf54Q8WWF1 131 aa17.2■□□□□ 0.34
SSRP1-202ENST00000293880 FAM49AQ9H0Q0 323 aaPredicted RBP17.2■□□□□ 0.34
SSRP1-202ENST00000293880 ASCC2Q9H1I8 757 aaPredicted RBP17.2■□□□□ 0.34
SSRP1-202ENST00000293880 HAUS5O94927 633 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 ARL4CP56559 192 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 DCAF15Q66K64 600 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 PDIK1LQ8N165 341 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 LMCD1Q9NZU5 365 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 GOLGA8RI6L899 631 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 CHGBP05060 677 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 STAT3P40763 770 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 PPP2R2AP63151 447 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 PPM1NQ8N819 430 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 SH3GL2Q99962 352 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 ARHGEF12Q9NZN5 1544 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 CFAP69A5D8W1 941 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 HSPA8P11142 646 aaKnown RBP17.19■□□□□ 0.34
SSRP1-202ENST00000293880 DDIASQ8IXT1 998 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 TAGAPQ8N103 731 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 MS4A14Q96JA4 679 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 BMP3P12645 472 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 AP2B1P63010 937 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 SLC17A8Q8NDX2 589 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 BHMT2Q9H2M3 363 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 SHANK2Q9UPX8 1470 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 ZSCAN9O15535 394 aaPredicted RBP17.19■□□□□ 0.34
SSRP1-202ENST00000293880 PRPF3O43395 683 aaKnown RBP17.19■□□□□ 0.34
SSRP1-202ENST00000293880 EFTUD2Q15029 972 aaKnown RBP eCLIP17.19■□□□□ 0.347e-7■■■■■ 30.7
SSRP1-202ENST00000293880 KIAA1841Q6NSI8 718 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 ICA1LQ8NDH6 482 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 AP5M1Q9H0R1 490 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 SNX5Q9Y5X3 404 aa17.19■□□□□ 0.34
SSRP1-202ENST00000293880 E9PMD0 336 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 PJA2O43164 708 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 XPOTO43592 962 aaKnown RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 ATP1A1P05023 1023 aaKnown RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 OSBPP22059 807 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 SUN2Q9UH99 717 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 PAIP2BQ9ULR5 123 aaKnown RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 PLEKHG3A1L390 1219 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 PAMP19021 973 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 PRCPP42785 496 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 PDIA2Q13087 525 aaKnown RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 TMC4Q7Z404 712 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 SFR1Q86XK3 245 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 B4GALNT2Q8NHY0 566 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 ABCA5Q8WWZ7 1642 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 NBPF26B4DH59 902 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 CHUKO15111 745 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 ENO1P06733 434 aaKnown RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 GPS1Q13098 491 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 DCAF4L1Q3SXM0 396 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 NBPF15Q8N660 670 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 SH3RF3Q8TEJ3 882 aaPredicted RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 DDX47Q9H0S4 455 aaKnown RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 NEUROG2Q9H2A3 272 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 STX18Q9P2W9 335 aaKnown RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 NPHP3-ACAD11A0A0J9YXS1 232 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 GMNCA6NCL1 334 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 USP17L5A8MUK1 530 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 NCAPHQ15003 741 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 TMEM270Q6UE05 265 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 CYB5R4Q7L1T6 521 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 PLEKHF1Q96S99 279 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 OSBPL9Q96SU4 736 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 FAM213AQ9BRX8 229 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 ATP8B3O60423 1300 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 FAM180AQ6UWF9 173 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 DTX3LQ8TDB6 740 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 ASZ1Q8WWH4 475 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 NAF1Q96HR8 494 aaKnown RBP17.18■□□□□ 0.34
SSRP1-202ENST00000293880 AURKCQ9UQB9 309 aa17.18■□□□□ 0.34
SSRP1-202ENST00000293880 XDHP47989 1333 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 TCOF1Q13428 1488 aaKnown RBP17.17■□□□□ 0.34
SSRP1-202ENST00000293880 RAD17O75943 681 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 CACNB3P54284 484 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 DPY19L2Q6NUT2 758 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 ATF5Q9Y2D1 282 aaPredicted RBP17.17■□□□□ 0.34
SSRP1-202ENST00000293880 ARL13BQ3SXY8 428 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 FSCBQ5H9T9 825 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 RCOR1Q9UKL0 485 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 RNF103-CHMP3A0A140T963 221 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 MRPL28Q13084 256 aaKnown RBP17.17■□□□□ 0.34
SSRP1-202ENST00000293880 SLC16A4O15374 487 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 PDXDC2PQ6P474 469 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 KIFC3Q9BVG8 833 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 ZNF233A6NK53 670 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 CIAO1O76071 339 aa17.17■□□□□ 0.34
SSRP1-202ENST00000293880 WDR75Q8IWA0 830 aaKnown RBP17.17■□□□□ 0.34
SSRP1-202ENST00000293880 ZNF564Q8TBZ8 553 aaPredicted RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms